Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed08g2131 | ATGTCTTTAGAGCACGAGTTTTTGTTCCTTCCCTCGTCGGGGTTCGCCTCGACGATGGGGAACCTCAACTTCCTCTTCTGTTTCCTTCTCTTTGTTGTCGTTTTCGGCCTTTGCCTTAGCCCGGGCGGTCTAGCCTGGGCTCTCGTTTCGCGGCCGAGAAACAAACCCATCATTCCTGGCCCTTGTGGCACCCCTTTTTTAGGTCAAGTTTCAACCTTTACTTCATCCCTCACTCATAGAGCTCTCGCAAAGCTCGCTCAGACCTTAAAGGCGAAACCTTTAATGTCATTCTCTGTTGGGTTCACTCGTTTTGTCATTTCTAGCAACCCCGTCACTGCAAAAGAGCTCTTGAACAGCTCGGCTTTCGCCGACCGACCGATCAAAGAGTCGGCTTATGAGCTTTTGTTTCATAGGGCAATGGGGTTTGCTCCTTATGGAGAGTATTGGAGGAACCTTAGGAGAATCTCTTCCACTCATTTGTTTAGTCCCAAAAGAATTGCAAGTTTTGGGAAGTTGAGAGAGAGAATTGGGGTTGAAATGGTGGAAGAAATCAAGGGTTTGATGGGGAAAAATGGGGAAGTTGAAGTGAGGAAAGTTTTGCATTTTGGGTCATTGAATAATGTGATGGGGAGTGTTTTTGGGAAAAGTAGTTATGGGTTTGGTAGTGAAAGTGAGCTCGAGGGATTGGTGAGTGAAGGGTATGATTTGCTTGGGAGTTTCAATTGGAGTGATCACTTTCCTATTTTGGGTTGGTTGGATTTGCAAGGAGTGAGAAAAAGGTGCAAACTTTTGGTGGGGAAAGTGAATGTTTTTGTTGGGAAAATCATAGAAGAGCATAGAATGAATAGGAGGATTATTGAAGAAATTAATCAAGAAGGGCCAATTAATATTGTTCATGATCATAATGAAGATGGGGATTTTGTTGATGTGTTGCTTGATTTGGAAAAGGAAAACAAACTCACTGACTCTGATATGATTGCTGTGTTATGGGAGATGATCTTTAGAGGAACGGACACAGTGGCAATTCTCCTAGAATGGATTCTAGCAAGGATGGTTCTTCATCCCGACATCCAAACAAAGCTCCAAACCGAAATAGACCGAGTCGTCAAAACCGACCGAACCATTTCCGATTCAGACCTCCCAAACCTCCCTTATCTCCACGCAGTGGTCAAAGAGACTCTAAGAATGCATCCTCCTGGCCCACTCCTCTCGTGGGCCCGTCTCGCCATCCACGACACCCACGTCGGCGGCCACTTCATTCCAGCCGGTACAACGGCCATGGTCAACATGTGGGCCATAACCCACGACGACCAAGTCTGGCCCGACCCAACCGCATTCAAACCGGAACGGTTCATGAAAGATAATGTGGCCATAATGGGCTCAGATCTGCGGCTGGCACCCTTCGGGTCCGGAAGAAGGGTGTGCCCTGGCAAGGCCATGGGCCTTGCCACGGTTGAGCTTTGGCTTGCGCAATTGGTTCAAAGGTTCGAGTGGGTTCACGGGTCTGAAAATGGGGTGGACTTGTCTGAGTGTTTGAAGCTGTCATTGGAAATGAAACAGCCCTTGATCTGTAGGGCTGTTCCTAGAGCTGTGGGGTTGGAGTCTCAGCCATGA | 1614 | 47.71 | MSLEHEFLFLPSSGFASTMGNLNFLFCFLLFVVVFGLCLSPGGLAWALVSRPRNKPIIPGPCGTPFLGQVSTFTSSLTHRALAKLAQTLKAKPLMSFSVGFTRFVISSNPVTAKELLNSSAFADRPIKESAYELLFHRAMGFAPYGEYWRNLRRISSTHLFSPKRIASFGKLRERIGVEMVEEIKGLMGKNGEVEVRKVLHFGSLNNVMGSVFGKSSYGFGSESELEGLVSEGYDLLGSFNWSDHFPILGWLDLQGVRKRCKLLVGKVNVFVGKIIEEHRMNRRIIEEINQEGPINIVHDHNEDGDFVDVLLDLEKENKLTDSDMIAVLWEMIFRGTDTVAILLEWILARMVLHPDIQTKLQTEIDRVVKTDRTISDSDLPNLPYLHAVVKETLRMHPPGPLLSWARLAIHDTHVGGHFIPAGTTAMVNMWAITHDDQVWPDPTAFKPERFMKDNVAIMGSDLRLAPFGSGRRVCPGKAMGLATVELWLAQLVQRFEWVHGSENGVDLSECLKLSLEMKQPLICRAVPRAVGLESQP | 537 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 35279533 | 35282273 | + | Sed0007733.1 | Sed08g2131 | 723907 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed08g2131 | 537 | PRINTS | E-class P450 group I signature | 475 | 498 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed08g2131 | 537 | PRINTS | E-class P450 group I signature | 324 | 341 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed08g2131 | 537 | PRINTS | E-class P450 group I signature | 429 | 453 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed08g2131 | 537 | PRINTS | E-class P450 group I signature | 344 | 370 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed08g2131 | 537 | PRINTS | E-class P450 group I signature | 465 | 475 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed08g2131 | 537 | PRINTS | E-class P450 group I signature | 387 | 405 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed08g2131 | 537 | Gene3D | Cytochrome P450 | 47 | 527 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed08g2131 | 537 | SUPERFAMILY | Cytochrome P450 | 58 | 529 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed08g2131 | 537 | FunFam | Cytochrome P450 78A5 | 50 | 529 | - | - | |
| Sed08g2131 | 537 | Pfam | Cytochrome P450 | 59 | 513 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed08g2131 | 537 | CDD | CYP78 | 90 | 522 | - | - | |
| Sed08g2131 | 537 | PRINTS | P450 superfamily signature | 335 | 352 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed08g2131 | 537 | PRINTS | P450 superfamily signature | 388 | 399 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed08g2131 | 537 | PRINTS | P450 superfamily signature | 466 | 475 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed08g2131 | 537 | PANTHER | CYTOCHROME P450 78A7-RELATED | 24 | 526 | IPR051996 | - | |
| Sed08g2131 | 537 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 468 | 477 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed03g2560 | Sed-Chr3:40912196 | Sed08g2131 | Sed-Chr8:35279533 | 1.30E-188 | dispersed | |
| Sed06g1750 | Sed-Chr6:42217602 | Sed08g2131 | Sed-Chr8:35279533 | 2.40E-155 | dispersed | |
| Sed08g2131 | Sed-Chr8:35279533 | Sed09g0579 | Sed-Chr9:6589623 | 1.00E-135 | dispersed | |
| Sed04g2295 | Sed-Chr4:36627529 | Sed08g2131 | Sed-Chr8:35279533 | 2.10E-138 | transposed | |
| Sed05g3831 | Sed-Chr5:45918827 | Sed08g2131 | Sed-Chr8:35279533 | 5.80E-136 | transposed | |
| Sed01g2286 | Sed-Chr1:17299618 | Sed08g2131 | Sed-Chr8:35279533 | 3.80E-284 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed08g2131 | K20619 | - | csv:101203458 | 847.425 |