Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2132 ATGATTTCAGATAAACACATATACCAAGCTGTTTCAGCCACTTTCTTTATTATATCTATGATTTCTCTGACAGCCTCATACGACTTGTTGGACCCGAATGGAAACATCGAAATCAAATGGGATGTCATGTACTGGACTGGAGATGGTTATGGGGCAACCGTGACGATAACCAACTTCCAGACGTACCGGCATATCACGAGCCCCGGGTGGACGTTGGGATGGGTTTGGGCAAAGAAAGAGATCATCTGGTCCATGCAGGGAGCTCAAGCTACAGATCAAGGAGATTGTTCCACATCCACTTTTACACAAACTATCCCACACAGTTGCAAAAGAGATCCAACAGTGGTTGACTTGCTGCCAGGTGTTCCTTACAATAAACAGGCCACTGGATGCTGCAAAGGTGGTGTTTTGGCATCTTGGGAACAAGATCCTTCATCTGCTGTCTCAACCTTCCAATTGACTGTTGGTCATTCTGGTAGTTCAAATAAAACAGTGAGACTTCCCAAGAATTTCACCTTGTATGGTCCCGGGCTAGGCTACACATGCGGCCCTGCAACGATTGCCCCGCCGTCGGCTTTCTACACACCCGATCGTCGGCGAAAAACTAATGCATTGATGACTTGGAATGTGACTTGCACTTACTCCCAGTTTCTTGCTTCTGAAACGCCAACCTGCTGTGTCTCCATGTCATCTTTCTATGACTCAAACATCACTCCTTGTCAAACATGTTGTTTTAACTGTATCCCAACAAAGTTAGTTTCATTGGCTGCAAGTGCTGCTGCTTCTGCTACAATGACGCCACTTAATGTTGATGTACCGCCTAATAAGCTTATGGAGCTTGTTGCAAAGGGTCTTGCAGTGGAGAAAGATGAGATGTTAAGAGGGAATCCTGCATCTGCATTGTATGAATTTGGTTCATCTGTGCCTACTACATTTGGGTCTACACAGGCCTCTCGTTCTTCTGCTATCGACTTCAGCGCTGCAAAGGATACAAAAGGTTCGTCGAAGAGTTTTCCGAAGCATGAGACACGACATCTTTCGGAGCATAAGAATGTTGCCAGATGTGCAAGGTTCAGTGCTGATGGGAGATTTGTTGCCACTGGAAGCGCGGATATGTCAATAAAGCTGTTTGAGGTGGCCAAGATCAAGCAGATGATGCTGCAAGATGCAAAAGATGGTCCTGTCCGACCTGTTATAAGAACATTTTACGATCACATTCAACCAATAAATGATTTAGATTTTCATCCTCAGAATACTGTTCTTATAACTGGTGCAAAAGATCAGACAATAAAGTTCTTTGACTTCTCCAAATTGACTGCAAAGAAAGCATTCAGAGTTATCCAGGATACTCATAACGTGCGTTCTATATCGCTTCATCCTTCAGGAGACTATCTTTTAGCTGGAACGGATCATCCCATTGCCCACCTGTATGATGTGAATACTTTCCAGTGCTTTCTATCTGCAAATGTTCCAGAAATAGGAAATAATGGAGCCATAAATCAGATCAGGTATTCAGCAACAGGTAGCATGTATGTTACTGCTTCGAAAGACGGTGCAGTTCGTTTATGGGACGGTGTTAGTGCGAAATGTCTCCGCTCCATGGTTAATGCACATGGCACAGCAGAGGCAACCAGTGCAAAATTCACAAAGGATGAAAGGTTTGTTCTTTCTTGTGGAAAGGACTCTACTGTAAAGCTTTGGGACGTAGGAACGGGGAAACTGGTCAAACAATATGTTGGAGCTACTCATATGCAATTGAGGTGTCAGGCTGTCTTCAATGATACTGAAGAGTTTGTCCTATCAGTAGATGAACCAAGCAATGAGATTGTTATTTGGGATGCTTTGACAGCAGAGAGAGTAGCAAGGTGCCCTTCGAACCACATCGGAGCACCCCGATGGCTCGAGCACTCACCAACAGAGTCGGCCTTCATTTCCTGCGGGACCGATAAATCGATTCGCTTTTGGAAGGAAACTCTCTAG 1980 44.65 MISDKHIYQAVSATFFIISMISLTASYDLLDPNGNIEIKWDVMYWTGDGYGATVTITNFQTYRHITSPGWTLGWVWAKKEIIWSMQGAQATDQGDCSTSTFTQTIPHSCKRDPTVVDLLPGVPYNKQATGCCKGGVLASWEQDPSSAVSTFQLTVGHSGSSNKTVRLPKNFTLYGPGLGYTCGPATIAPPSAFYTPDRRRKTNALMTWNVTCTYSQFLASETPTCCVSMSSFYDSNITPCQTCCFNCIPTKLVSLAASAAASATMTPLNVDVPPNKLMELVAKGLAVEKDEMLRGNPASALYEFGSSVPTTFGSTQASRSSAIDFSAAKDTKGSSKSFPKHETRHLSEHKNVARCARFSADGRFVATGSADMSIKLFEVAKIKQMMLQDAKDGPVRPVIRTFYDHIQPINDLDFHPQNTVLITGAKDQTIKFFDFSKLTAKKAFRVIQDTHNVRSISLHPSGDYLLAGTDHPIAHLYDVNTFQCFLSANVPEIGNNGAINQIRYSATGSMYVTASKDGAVRLWDGVSAKCLRSMVNAHGTAEATSAKFTKDERFVLSCGKDSTVKLWDVGTGKLVKQYVGATHMQLRCQAVFNDTEEFVLSVDEPSNEIVIWDALTAERVARCPSNHIGAPRWLEHSPTESAFISCGTDKSIRFWKETL 659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 35298370 35310466 - Sed0027469.1 Sed08g2132 723908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2132 659 SUPERFAMILY WD40 repeat-like 338 656 IPR036322 GO:0005515(InterPro)
Sed08g2132 659 ProSitePatterns Trp-Asp (WD) repeats signature. 555 569 IPR019775 -
Sed08g2132 659 ProSiteProfiles Trp-Asp (WD) repeats profile. 492 533 IPR001680 GO:0005515(InterPro)
Sed08g2132 659 FunFam Cleavage stimulation factor subunit 50 329 659 - -
Sed08g2132 659 Pfam COBRA-like protein 50 215 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Sed08g2132 659 PRINTS G protein beta WD-40 repeat signature 643 657 IPR020472 -
Sed08g2132 659 PRINTS G protein beta WD-40 repeat signature 511 525 IPR020472 -
Sed08g2132 659 PRINTS G protein beta WD-40 repeat signature 555 569 IPR020472 -
Sed08g2132 659 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 492 524 - -
Sed08g2132 659 Pfam WD domain, G-beta repeat 494 524 IPR001680 GO:0005515(InterPro)
Sed08g2132 659 Pfam WD domain, G-beta repeat 529 568 IPR001680 GO:0005515(InterPro)
Sed08g2132 659 Pfam WD domain, G-beta repeat 343 377 IPR001680 GO:0005515(InterPro)
Sed08g2132 659 Pfam WD domain, G-beta repeat 399 434 IPR001680 GO:0005515(InterPro)
Sed08g2132 659 ProSiteProfiles Trp-Asp (WD) repeats profile. 346 387 IPR001680 GO:0005515(InterPro)
Sed08g2132 659 ProSiteProfiles Trp-Asp (WD) repeats profile. 402 443 IPR001680 GO:0005515(InterPro)
Sed08g2132 659 ProSiteProfiles Trp-Asp (WD) repeats profile. 544 577 IPR001680 GO:0005515(InterPro)
Sed08g2132 659 CDD WD40 342 656 - -
Sed08g2132 659 Gene3D - 326 658 IPR015943 GO:0005515(InterPro)
Sed08g2132 659 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 1 255 658 IPR044633 GO:0003723(PANTHER)|GO:0005848(InterPro)|GO:0005848(PANTHER)|GO:0031124(InterPro)
Sed08g2132 659 SMART WD40_4 440 478 IPR001680 GO:0005515(InterPro)
Sed08g2132 659 SMART WD40_4 395 434 IPR001680 GO:0005515(InterPro)
Sed08g2132 659 SMART WD40_4 616 656 IPR001680 GO:0005515(InterPro)
Sed08g2132 659 SMART WD40_4 527 568 IPR001680 GO:0005515(InterPro)
Sed08g2132 659 SMART WD40_4 571 613 IPR001680 GO:0005515(InterPro)
Sed08g2132 659 SMART WD40_4 481 524 IPR001680 GO:0005515(InterPro)
Sed08g2132 659 SMART WD40_4 339 378 IPR001680 GO:0005515(InterPro)
Sed08g2132 659 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 402 436 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2132 Sed-Chr8:35298370 Sed12g2020 Sed-Chr12:31062518 6.00E-90 dispersed
Sed12g2019 Sed-Chr12:31054307 Sed08g2132 Sed-Chr8:35298370 1.40E-75 wgd
Sed08g0288 Sed-Chr8:1707122 Sed08g2132 Sed-Chr8:35298370 1.40E-90 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2132 K14406 - csv:101206503 760.37