Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2132 ATGATTTCAGATAAACACATATACCAAGCTGTTTCAGCCACTTTCTTTATTATATCTATGATTTCTCTGACAGCCTCATACGACTTGTTGGACCCGAATGGAAACATCGAAATCAAATGGGATGTCATGTACTGGACTGGAGATGGTTATGGGGCAACCGTGACGATAACCAACTTCCAGACGTACCGGCATATCACGAGCCCCGGGTGGACGTTGGGATGGGTTTGGGCAAAGAAAGAGATCATCTGGTCCATGCAGGGAGCTCAAGCTACAGATCAAGGAGATTGTTCCACATCCACTTTTACACAAACTATCCCACACAGTTGCAAAAGAGATCCAACAGTGGTTGACTTGCTGCCAGGTGTTCCTTACAATAAACAGGCCACTGGATGCTGCAAAGGTGGTGTTTTGGCATCTTGGGAACAAGATCCTTCATCTGCTGTCTCAACCTTCCAATTGACTGTTGGTCATTCTGGTAGTTCAAATAAAACAGTGAGACTTCCCAAGAATTTCACCTTGTATGGTCCCGGGCTAGGCTACACATGCGGCCCTGCAACGATTGCCCCGCCGTCGGCTTTCTACACACCCGATCGTCGGCGAAAAACTAATGCATTGATGACTTGGAATGTGACTTGCACTTACTCCCAGTTTCTTGCTTCTGAAACGCCAACCTGCTGTGTCTCCATGTCATCTTTCTATGACTCAAACATCACTCCTTGTCAAACATGTTGTTTTAACTGTATCCCAACAAAGTTAGTTTCATTGGCTGCAAGTGCTGCTGCTTCTGCTACAATGACGCCACTTAATGTTGATGTACCGCCTAATAAGCTTATGGAGCTTGTTGCAAAGGGTCTTGCAGTGGAGAAAGATGAGATGTTAAGAGGGAATCCTGCATCTGCATTGTATGAATTTGGTTCATCTGTGCCTACTACATTTGGGTCTACACAGGCCTCTCGTTCTTCTGCTATCGACTTCAGCGCTGCAAAGGATACAAAAGGTTCGTCGAAGAGTTTTCCGAAGCATGAGACACGACATCTTTCGGAGCATAAGAATGTTGCCAGATGTGCAAGGTTCAGTGCTGATGGGAGATTTGTTGCCACTGGAAGCGCGGATATGTCAATAAAGCTGTTTGAGGTGGCCAAGATCAAGCAGATGATGCTGCAAGATGCAAAAGATGGTCCTGTCCGACCTGTTATAAGAACATTTTACGATCACATTCAACCAATAAATGATTTAGATTTTCATCCTCAGAATACTGTTCTTATAACTGGTGCAAAAGATCAGACAATAAAGTTCTTTGACTTCTCCAAATTGACTGCAAAGAAAGCATTCAGAGTTATCCAGGATACTCATAACGTGCGTTCTATATCGCTTCATCCTTCAGGAGACTATCTTTTAGCTGGAACGGATCATCCCATTGCCCACCTGTATGATGTGAATACTTTCCAGTGCTTTCTATCTGCAAATGTTCCAGAAATAGGAAATAATGGAGCCATAAATCAGATCAGGTATTCAGCAACAGGTAGCATGTATGTTACTGCTTCGAAAGACGGTGCAGTTCGTTTATGGGACGGTGTTAGTGCGAAATGTCTCCGCTCCATGGTTAATGCACATGGCACAGCAGAGGCAACCAGTGCAAAATTCACAAAGGATGAAAGGTTTGTTCTTTCTTGTGGAAAGGACTCTACTGTAAAGCTTTGGGACGTAGGAACGGGGAAACTGGTCAAACAATATGTTGGAGCTACTCATATGCAATTGAGGTGTCAGGCTGTCTTCAATGATACTGAAGAGTTTGTCCTATCAGTAGATGAACCAAGCAATGAGATTGTTATTTGGGATGCTTTGACAGCAGAGAGAGTAGCAAGGTGCCCTTCGAACCACATCGGAGCACCCCGATGGCTCGAGCACTCACCAACAGAGTCGGCCTTCATTTCCTGCGGGACCGATAAATCGATTCGCTTTTGGAAGGAAACTCTCTAG 1980 44.65 MISDKHIYQAVSATFFIISMISLTASYDLLDPNGNIEIKWDVMYWTGDGYGATVTITNFQTYRHITSPGWTLGWVWAKKEIIWSMQGAQATDQGDCSTSTFTQTIPHSCKRDPTVVDLLPGVPYNKQATGCCKGGVLASWEQDPSSAVSTFQLTVGHSGSSNKTVRLPKNFTLYGPGLGYTCGPATIAPPSAFYTPDRRRKTNALMTWNVTCTYSQFLASETPTCCVSMSSFYDSNITPCQTCCFNCIPTKLVSLAASAAASATMTPLNVDVPPNKLMELVAKGLAVEKDEMLRGNPASALYEFGSSVPTTFGSTQASRSSAIDFSAAKDTKGSSKSFPKHETRHLSEHKNVARCARFSADGRFVATGSADMSIKLFEVAKIKQMMLQDAKDGPVRPVIRTFYDHIQPINDLDFHPQNTVLITGAKDQTIKFFDFSKLTAKKAFRVIQDTHNVRSISLHPSGDYLLAGTDHPIAHLYDVNTFQCFLSANVPEIGNNGAINQIRYSATGSMYVTASKDGAVRLWDGVSAKCLRSMVNAHGTAEATSAKFTKDERFVLSCGKDSTVKLWDVGTGKLVKQYVGATHMQLRCQAVFNDTEEFVLSVDEPSNEIVIWDALTAERVARCPSNHIGAPRWLEHSPTESAFISCGTDKSIRFWKETL 659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 35298370 35310466 - Sed0027469.1 Sed08g2132 723908

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2132 659 SUPERFAMILY WD40 repeat-like 338 656 IPR036322 GO:0005515(InterPro)
Sed08g2132 659 ProSitePatterns Trp-Asp (WD) repeats signature. 555 569 IPR019775 -
Sed08g2132 659 ProSiteProfiles Trp-Asp (WD) repeats profile. 492 533 IPR001680 GO:0005515(InterPro)
Sed08g2132 659 FunFam Cleavage stimulation factor subunit 50 329 659 - -
Sed08g2132 659 Pfam COBRA-like protein 50 215 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Sed08g2132 659 PRINTS G protein beta WD-40 repeat signature 643 657 IPR020472 -
Sed08g2132 659 PRINTS G protein beta WD-40 repeat signature 511 525 IPR020472 -
Sed08g2132 659 PRINTS G protein beta WD-40 repeat signature 555 569 IPR020472 -
Sed08g2132 659 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 492 524 - -
Sed08g2132 659 Pfam WD domain, G-beta repeat 494 524 IPR001680 GO:0005515(InterPro)
Sed08g2132 659 Pfam WD domain, G-beta repeat 529 568 IPR001680 GO:0005515(InterPro)
Sed08g2132 659 Pfam WD domain, G-beta repeat 343 377 IPR001680 GO:0005515(InterPro)
Sed08g2132 659 Pfam WD domain, G-beta repeat 399 434 IPR001680 GO:0005515(InterPro)
Sed08g2132 659 ProSiteProfiles Trp-Asp (WD) repeats profile. 346 387 IPR001680 GO:0005515(InterPro)
Sed08g2132 659 ProSiteProfiles Trp-Asp (WD) repeats profile. 402 443 IPR001680 GO:0005515(InterPro)
Sed08g2132 659 ProSiteProfiles Trp-Asp (WD) repeats profile. 544 577 IPR001680 GO:0005515(InterPro)
Sed08g2132 659 CDD WD40 342 656 - -
Sed08g2132 659 Gene3D - 326 658 IPR015943 GO:0005515(InterPro)
Sed08g2132 659 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 1 255 658 IPR044633 GO:0003723(PANTHER)|GO:0005848(InterPro)|GO:0005848(PANTHER)|GO:0031124(InterPro)
Sed08g2132 659 SMART WD40_4 440 478 IPR001680 GO:0005515(InterPro)
Sed08g2132 659 SMART WD40_4 395 434 IPR001680 GO:0005515(InterPro)
Sed08g2132 659 SMART WD40_4 616 656 IPR001680 GO:0005515(InterPro)
Sed08g2132 659 SMART WD40_4 527 568 IPR001680 GO:0005515(InterPro)
Sed08g2132 659 SMART WD40_4 571 613 IPR001680 GO:0005515(InterPro)
Sed08g2132 659 SMART WD40_4 481 524 IPR001680 GO:0005515(InterPro)
Sed08g2132 659 SMART WD40_4 339 378 IPR001680 GO:0005515(InterPro)
Sed08g2132 659 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 402 436 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2132 K14406 - - csv:101206503 760.37
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2132 Sed-Chr8:35298370 Sed12g2020 Sed-Chr12:31062518 6.00E-90 dispersed
Sed12g2019 Sed-Chr12:31054307 Sed08g2132 Sed-Chr8:35298370 1.40E-75 wgd
Sed08g0288 Sed-Chr8:1707122 Sed08g2132 Sed-Chr8:35298370 1.40E-90 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g447 . . . . . . . . Cmo13g01108 . . . . . . Cpe20g00085 . . . . . . . . . . . . . . . . Cone16ag0219 . . Lsi02g00134 Csa01g00616 Chy12g01484 Cme12g01925 . . Bda11g01767 . . . . . Sed08g2132 . . Cma13g01063 . Car13g00899 . . . Bhi08g01068 Tan05g2342 Cmetu12g1898 Lac10g0178 Hepe07g2449 . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed08g0288 . 40 439 COBRA Gene Family AT5G60920 78.8 2.4e-206 715.7
Sed12g2020 . 48 448 COBRA Gene Family AT5G60920 78.4 5.4e-206 714.5
Sed06g0869 . 36 434 COBRA Gene Family AT5G60920 74.7 7.9e-197 684.1
Sed08g0289 . 55 454 COBRA Gene Family AT5G60920 67.4 9.0e-177 617.5
Sed06g0870 . 31 427 COBRA Gene Family AT5G60920 67.9 4.5e-176 615.1
Sed04g1592 . 56 454 COBRA Gene Family AT5G60920 52.8 7.8e-128 454.9
Sed08g2132 . 38 247 COBRA Gene Family AT5G60920 67.1 9.6e-86 315.1
Sed12g2019 . 48 225 COBRA Gene Family AT5G60920 78.1 1.4e-84 311.2
Sed12g2020 . 22 452 COBRA Gene Family AT3G02210 73.3 4.0e-202 701.8
Sed08g0288 . 14 444 COBRA Gene Family AT3G02210 72.5 1.5e-201 699.9
Sed06g0869 . 19 440 COBRA Gene Family AT3G02210 74.7 4.4e-201 698.4
Sed08g0289 . 27 453 COBRA Gene Family AT3G02210 66.5 5.7e-180 628.2
Sed06g0870 . 5 429 COBRA Gene Family AT3G02210 67.3 2.8e-179 625.9
Sed04g1592 . 26 458 COBRA Gene Family AT3G02210 54.0 6.3e-139 491.9
Sed08g2132 . 16 247 COBRA Gene Family AT3G02210 65.4 4.2e-90 329.7
Sed12g2019 . 22 225 COBRA Gene Family AT3G02210 73.5 3.5e-89 326.6
Sed12g2020 . 22 452 COBRA Gene Family AT3G29810 73.9 3.7e-200 695.3
Sed08g0288 . 14 430 COBRA Gene Family AT3G29810 74.9 2.0e-198 689.5
Sed06g0869 . 20 440 COBRA Gene Family AT3G29810 71.5 5.7e-193 671.4
Sed06g0870 . 14 428 COBRA Gene Family AT3G29810 67.5 7.5e-177 617.8
Sed08g0289 . 38 436 COBRA Gene Family AT3G29810 67.2 3.1e-175 612.5
Sed04g1592 . 27 455 COBRA Gene Family AT3G29810 52.8 1.6e-134 477.2
Sed08g2132 . 24 247 COBRA Gene Family AT3G29810 63.4 4.5e-89 326.2
Sed12g2019 . 22 225 COBRA Gene Family AT3G29810 71.4 3.8e-88 323.2
Sed08g0289 . 43 363 COBRA Gene Family AT5G15630 85.7 1.5e-177 619.8
Sed06g0870 . 1 339 COBRA Gene Family AT5G15630 82.1 4.1e-175 611.7
Sed12g2020 . 31 361 COBRA Gene Family AT5G15630 73.2 4.6e-150 528.5
Sed08g0288 . 23 353 COBRA Gene Family AT5G15630 72.6 6.0e-150 528.1
Sed06g0869 . 24 350 COBRA Gene Family AT5G15630 68.5 1.3e-144 510.4
Sed08g2132 . 15 247 COBRA Gene Family AT5G15630 66.5 1.4e-93 340.9
Sed12g2019 . 31 225 COBRA Gene Family AT5G15630 76.4 1.0e-85 314.7
Sed06g0869 . 32 212 COBRA Gene Family AT5G60950 60.8 1.5e-63 240.4
Sed08g0288 . 22 216 COBRA Gene Family AT5G60950 58.2 9.7e-63 237.7
Sed12g2020 . 30 224 COBRA Gene Family AT5G60950 57.1 3.7e-62 235.7
Sed12g2019 . 21 225 COBRA Gene Family AT5G60950 55.1 6.5e-59 224.9
Sed06g0870 . 27 207 COBRA Gene Family AT5G60950 55.2 2.3e-56 216.5
Sed08g0289 . 51 231 COBRA Gene Family AT5G60950 55.8 1.5e-55 213.8
Sed04g1592 . 27 438 COBRA Gene Family AT1G09790 58.9 7.1e-151 531.6
Sed06g0869 . 14 420 COBRA Gene Family AT1G09790 52.4 2.5e-132 469.9
Sed08g0289 . 30 434 COBRA Gene Family AT1G09790 52.9 2.5e-132 469.9
Sed12g2020 . 28 432 COBRA Gene Family AT1G09790 52.6 6.2e-131 465.3
Sed08g0288 . 20 424 COBRA Gene Family AT1G09790 51.7 5.3e-130 462.2
Sed06g0870 . 15 411 COBRA Gene Family AT1G09790 52.8 9.9e-129 458.0
Sed12g0793 . 31 641 COBRA Gene Family AT4G16120 65.3 2.4e-251 865.9
Sed02g1150 . 36 630 COBRA Gene Family AT4G16120 66.8 4.0e-251 865.1
Sed07g1929 . 64 663 COBRA Gene Family AT4G16120 53.4 4.5e-202 702.2
Sed02g1150 . 8 651 COBRA Gene Family AT3G16860 60.4 3.3e-237 818.9
Sed12g0793 . 5 633 COBRA Gene Family AT3G16860 60.7 1.5e-234 810.1
Sed07g1929 . 59 658 COBRA Gene Family AT3G16860 51.8 3.8e-193 672.5
Sed12g0793 . 9 648 COBRA Gene Family AT5G49270 59.3 6.2e-236 814.7
Sed02g1150 . 10 632 COBRA Gene Family AT5G49270 60.6 5.3e-235 811.6
Sed07g1929 . 68 662 COBRA Gene Family AT5G49270 51.9 8.0e-199 691.4
Sed07g1929 . 6 682 COBRA Gene Family AT3G20580 59.7 3.0e-246 849.0
Sed12g0793 . 25 645 COBRA Gene Family AT3G20580 54.4 1.2e-205 714.1
Sed02g1150 . 29 629 COBRA Gene Family AT3G20580 54.4 1.6e-202 703.7
Sed07g1929 . 62 683 COBRA Gene Family AT4G27110 61.6 5.7e-237 818.1
Sed02g1150 . 26 647 COBRA Gene Family AT4G27110 52.2 5.6e-200 695.3
Sed12g0793 . 20 645 COBRA Gene Family AT4G27110 51.6 3.7e-196 682.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009578 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 32