Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2135 ATGGGGAGAGGTAGAGTGCAATTGAAGAGGATTGAGAACAAGATAAACAGACAAGTGACTTTCTCTAAGAGAAGGTCTGGTTTGTTGAAGAAAGCTAATGAAATTTCTGTTCTTTGTGATGCTGAAGTTGCTCTTATTGTCTTCTCCACCAAAGGAAAGCTCTTTGAATACTCTTCTGATTCTTGCATGGAGAAAATCCTTGAGCGATATGAAAGATACTCATATGCAGAGAGGAGACTTATTGCAAATGATAATCAATCAAATGGAAATTGGACTCTTGAACATGCAAAGCTTAAAGCTAGGATTGAAGTTCTTCAGAGAAACCATAGTCATTACATGGGGGAAGAGCTTGACTCTTTGAGCTTAAAAGAGCTTCAAAATATTGAGCAACAACTTGATTCTGCACTCAAGCATGTAAGAACTAAGAAGAACCAACTCATGCATGAATCCATTTCAGAGCTTCAGAAAAAGGACAAGGCCCTACAAGAGCAAAACAACATGTTAGCCAAGAAGATAAAAGAAGAGGAGAAAGCTCAAGCTCAAAATCCACCATTGGAGCAGCAGCAAAATAGCCATGGCATTGAACCTTCCTCACTTTTTCTACCTCACCCATTCCAATCACTCACCATGAATTGTCCTTACCCATCCCTCGACACCATAGACGAAGATGTAACCATCAACCACGACAGATCGGCCAGTGCCCTCCTGCCGCCATGGATGCTCAGCCACCACCTTGGTTAA 741 41.43 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKANEISVLCDAEVALIVFSTKGKLFEYSSDSCMEKILERYERYSYAERRLIANDNQSNGNWTLEHAKLKARIEVLQRNHSHYMGEELDSLSLKELQNIEQQLDSALKHVRTKKNQLMHESISELQKKDKALQEQNNMLAKKIKEEEKAQAQNPPLEQQQNSHGIEPSSLFLPHPFQSLTMNCPYPSLDTIDEDVTINHDRSASALLPPWMLSHHLG 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 35345567 35353438 + Sed0023078.1 Sed08g2135 723911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2135 246 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed08g2135 246 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed08g2135 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed08g2135 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed08g2135 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed08g2135 246 Coils Coil 151 181 - -
Sed08g2135 246 Gene3D - 13 86 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed08g2135 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed08g2135 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 188 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed08g2135 246 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed08g2135 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed08g2135 246 Pfam K-box region 85 172 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed08g2135 246 MobiDBLite consensus disorder prediction 175 199 - -
Sed08g2135 246 MobiDBLite consensus disorder prediction 181 199 - -
Sed08g2135 246 Coils Coil 122 145 - -
Sed08g2135 246 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Sed08g2135 246 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed08g2135 246 FunFam MADS-box transcription factor MADS-MC 13 86 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2264 Sed-Chr3:17047813 Sed08g2135 Sed-Chr8:35345567 4.70E-36 dispersed
Sed04g0084 Sed-Chr4:498590 Sed08g2135 Sed-Chr8:35345567 8.40E-68 dispersed
Sed06g0876 Sed-Chr6:10454035 Sed08g2135 Sed-Chr8:35345567 1.40E-60 dispersed
Sed06g0877 Sed-Chr6:10454035 Sed08g2135 Sed-Chr8:35345567 3.80E-52 dispersed
Sed08g2135 Sed-Chr8:35345567 Sed09g0101 Sed-Chr9:753468 9.60E-41 dispersed
Sed01g2282 Sed-Chr1:17231695 Sed08g2135 Sed-Chr8:35345567 6.30E-109 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39415 PF01486 K-box 6.70E-28 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2135 K09264 - csv:101207225 368.237