Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed08g2135 | ATGGGGAGAGGTAGAGTGCAATTGAAGAGGATTGAGAACAAGATAAACAGACAAGTGACTTTCTCTAAGAGAAGGTCTGGTTTGTTGAAGAAAGCTAATGAAATTTCTGTTCTTTGTGATGCTGAAGTTGCTCTTATTGTCTTCTCCACCAAAGGAAAGCTCTTTGAATACTCTTCTGATTCTTGCATGGAGAAAATCCTTGAGCGATATGAAAGATACTCATATGCAGAGAGGAGACTTATTGCAAATGATAATCAATCAAATGGAAATTGGACTCTTGAACATGCAAAGCTTAAAGCTAGGATTGAAGTTCTTCAGAGAAACCATAGTCATTACATGGGGGAAGAGCTTGACTCTTTGAGCTTAAAAGAGCTTCAAAATATTGAGCAACAACTTGATTCTGCACTCAAGCATGTAAGAACTAAGAAGAACCAACTCATGCATGAATCCATTTCAGAGCTTCAGAAAAAGGACAAGGCCCTACAAGAGCAAAACAACATGTTAGCCAAGAAGATAAAAGAAGAGGAGAAAGCTCAAGCTCAAAATCCACCATTGGAGCAGCAGCAAAATAGCCATGGCATTGAACCTTCCTCACTTTTTCTACCTCACCCATTCCAATCACTCACCATGAATTGTCCTTACCCATCCCTCGACACCATAGACGAAGATGTAACCATCAACCACGACAGATCGGCCAGTGCCCTCCTGCCGCCATGGATGCTCAGCCACCACCTTGGTTAA | 741 | 41.43 | MGRGRVQLKRIENKINRQVTFSKRRSGLLKKANEISVLCDAEVALIVFSTKGKLFEYSSDSCMEKILERYERYSYAERRLIANDNQSNGNWTLEHAKLKARIEVLQRNHSHYMGEELDSLSLKELQNIEQQLDSALKHVRTKKNQLMHESISELQKKDKALQEQNNMLAKKIKEEEKAQAQNPPLEQQQNSHGIEPSSLFLPHPFQSLTMNCPYPSLDTIDEDVTINHDRSASALLPPWMLSHHLG | 246 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 35345567 | 35353438 | + | Sed0023078.1 | Sed08g2135 | 723911 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed08g2135 | 246 | ProSiteProfiles | K-box domain profile. | 88 | 178 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Sed08g2135 | 246 | SUPERFAMILY | SRF-like | 2 | 91 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed08g2135 | 246 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed08g2135 | 246 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed08g2135 | 246 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed08g2135 | 246 | Coils | Coil | 151 | 181 | - | - | |
Sed08g2135 | 246 | Gene3D | - | 13 | 86 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed08g2135 | 246 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed08g2135 | 246 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 188 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Sed08g2135 | 246 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed08g2135 | 246 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed08g2135 | 246 | Pfam | K-box region | 85 | 172 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Sed08g2135 | 246 | MobiDBLite | consensus disorder prediction | 175 | 199 | - | - | |
Sed08g2135 | 246 | MobiDBLite | consensus disorder prediction | 181 | 199 | - | - | |
Sed08g2135 | 246 | Coils | Coil | 122 | 145 | - | - | |
Sed08g2135 | 246 | CDD | MADS_MEF2_like | 2 | 76 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Sed08g2135 | 246 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed08g2135 | 246 | FunFam | MADS-box transcription factor MADS-MC | 13 | 86 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g2264 | Sed-Chr3:17047813 | Sed08g2135 | Sed-Chr8:35345567 | 4.70E-36 | dispersed | |
Sed04g0084 | Sed-Chr4:498590 | Sed08g2135 | Sed-Chr8:35345567 | 8.40E-68 | dispersed | |
Sed06g0876 | Sed-Chr6:10454035 | Sed08g2135 | Sed-Chr8:35345567 | 1.40E-60 | dispersed | |
Sed06g0877 | Sed-Chr6:10454035 | Sed08g2135 | Sed-Chr8:35345567 | 3.80E-52 | dispersed | |
Sed08g2135 | Sed-Chr8:35345567 | Sed09g0101 | Sed-Chr9:753468 | 9.60E-41 | dispersed | |
Sed01g2282 | Sed-Chr1:17231695 | Sed08g2135 | Sed-Chr8:35345567 | 6.30E-109 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39415 | PF01486 | K-box | 6.70E-28 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed08g2135 | K09264 | - | csv:101207225 | 368.237 |