Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2145 ATGAAACTACTAACCCGTTTCCTCTGCTCGCCGCCGTTCCTCCGGTGCCCCGTCCGAGCTCCTTCGTCGGCAGTAATCCAGGCGGTCCGGCCACTCCGCCACTCATCGGCGATGGCGAGCGATCCATTCAACTCCGCCTCCACAGAAGATCGCCTGAAAACCCTAATTTCCCGTCATGCCGGGAGTGCCAAATCCGGTGTCGAAGGCGAATCAGTTGAAGATAAAATGCAAGAAAACCAGGCGCCGATCGACGGTAATCCTTATTCTATCTGTGTAATTTGTTTTTCGGACGATGGAAAAGCGGACAGAGGAAAGCTTGATTCCTGCGATCACTATTTTTGCTTCGTGTGCATCATGGAGTGGGCGAGGATTGAATCTAGATGCCCCGCCTGCAAGGGAAGGTTCAGTGCGGTTCATAGAATTCCCAACGATGGCTGTCGTCTCCGTCAACGAGTTGTTAAAATTCCTGTGCGGAATCAGGATCACTCGAGCAGCGGAAATACTACGAATAGGGATCCATATGCAGAAACACGTTGCACTGTGTGCAAGGGTATGGAAGATGAAGGTCACATGTTACTCTGTGATCTCTGCGACTCAGCTGCTCATACTTATTGTGTCGGCCTAGGTGCTAATGTACCAGAAGGCGATTGGTTTTGTCATGATTGCTCTATCTCCAGAGCTCAACATGCTGATACTGAAGATACTAGTTGCAACGATCAAAATCAAATAGAAACAGCAACAGTTGAAGCACACACTTCCATTTTTGATATAGTGAGAGAATCGAGTGCTCAAATAGAAACAGCAACAGTTGAAACACCCATTTCCATTGCTGATATAGTGAGTGAATCGAGTGCCCAAACAGTTGGCATACCTCGCAGAAGAGGCCTTTCACATTCAAATCACGAACCGCCTCCTATTGACCCTAGTAGGAGAAGCATCATGCCCAATAAATCATTGCCTAGTCGTAGTGGTAAAGCTGCTGGAACAAGTGCAAGAACATTACATCGATGTCGCAACATCCATGGCCATATAAGGGCATTACGTGAAAATTGGGGTGCCTTGCGAAGGGGGTCATTGAACTTTCCTTCTAGCAGCTCGTCGTCACACAGTGGCAATAGTTCCAAACAAGATATTAGTGCTGTGGCTCCTCTAAACAACCAAACAGGTCAACCACTTCCCTCAACAACCACAAGCTTGCAGCCACCCTCTCAACCTGAGTGTAACGAAAGGTCTTACGATGTTGAGAAGGCGTGGAGAATGATGGAAATTGCAAAGTCGAAGGCCATACGAGAAGGAGAACAAACCTTGAAATCTCCTGCTAGTAGACAAATTAACACAAAAGTAAAAGATACCCATACAGCAAAAGATAGCCAACAGTACAAAATCAAGAAGCTAAATGAGCCAGCAAAGGATAAGAAGGAAATGGGCAAGTACAGATCGCCAGCGTTGGATAAGCAACTGTGTCATCCTCTAGCTAGTAAGAAGAATAAACCTTCAAGAACGCATCAAACCAAATTGTGGATGAAGTTCCATCATCCTCCACAATGA 1548 46.58 MKLLTRFLCSPPFLRCPVRAPSSAVIQAVRPLRHSSAMASDPFNSASTEDRLKTLISRHAGSAKSGVEGESVEDKMQENQAPIDGNPYSICVICFSDDGKADRGKLDSCDHYFCFVCIMEWARIESRCPACKGRFSAVHRIPNDGCRLRQRVVKIPVRNQDHSSSGNTTNRDPYAETRCTVCKGMEDEGHMLLCDLCDSAAHTYCVGLGANVPEGDWFCHDCSISRAQHADTEDTSCNDQNQIETATVEAHTSIFDIVRESSAQIETATVETPISIADIVSESSAQTVGIPRRRGLSHSNHEPPPIDPSRRSIMPNKSLPSRSGKAAGTSARTLHRCRNIHGHIRALRENWGALRRGSLNFPSSSSSSHSGNSSKQDISAVAPLNNQTGQPLPSTTTSLQPPSQPECNERSYDVEKAWRMMEIAKSKAIREGEQTLKSPASRQINTKVKDTHTAKDSQQYKIKKLNEPAKDKKEMGKYRSPALDKQLCHPLASKKNKPSRTHQTKLWMKFHHPPQ 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 35372671 35377299 - Sed0027849.2 Sed08g2145 723921

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2145 515 MobiDBLite consensus disorder prediction 384 407 - -
Sed08g2145 515 Pfam PHD-finger 179 222 IPR019787 -
Sed08g2145 515 MobiDBLite consensus disorder prediction 284 335 - -
Sed08g2145 515 SMART ring_2 179 222 IPR001841 -
Sed08g2145 515 SMART ring_2 91 131 IPR001841 -
Sed08g2145 515 MobiDBLite consensus disorder prediction 384 410 - -
Sed08g2145 515 ProSiteProfiles Zinc finger PHD-type profile. 176 225 IPR019787 -
Sed08g2145 515 SUPERFAMILY FYVE/PHD zinc finger 170 226 IPR011011 -
Sed08g2145 515 MobiDBLite consensus disorder prediction 435 515 - -
Sed08g2145 515 SUPERFAMILY RING/U-box 90 144 - -
Sed08g2145 515 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 143 IPR013083 -
Sed08g2145 515 MobiDBLite consensus disorder prediction 314 328 - -
Sed08g2145 515 MobiDBLite consensus disorder prediction 448 480 - -
Sed08g2145 515 PANTHER F18C1.6 PROTEIN 68 465 - -
Sed08g2145 515 MobiDBLite consensus disorder prediction 495 515 - -
Sed08g2145 515 SMART PHD_3 178 223 IPR001965 -
Sed08g2145 515 Pfam Ring finger domain 91 132 IPR001841 -
Sed08g2145 515 ProSitePatterns Zinc finger RING-type signature. 109 118 IPR017907 -
Sed08g2145 515 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 236 IPR013083 -
Sed08g2145 515 ProSiteProfiles Zinc finger RING-type profile. 91 132 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2145 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2143 Sed-Chr8:35372324 Sed08g2145 Sed-Chr8:35372671 5.70E-277 dispersed
Sed08g2144 Sed-Chr8:35372671 Sed08g2145 Sed-Chr8:35372671 5.70E-277 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g415 . Blo16g00156 . . . Bpe13g00328 Bma06g00016 . Cmo13g01096 . . . . . . Cpe20g00095 . . . . . . . . . . . . . . . Cone2ag0788 . . . Lsi02g00146 Csa01g00629 Chy12g01471 Cme12g01913 . . . . . . . . Sed08g2145 . . Cma13g01053 . Car13g00887 . . . Bhi08g01047 Tan05g2316 Cmetu12g1391 Lac10g0192 Hepe07g2435 . . Cla04g01131 Cam04g1183 Cec01g1696 Cco01g1742 Clacu04g1211 Cmu04g1190 Cre01g1488 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008899 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 2 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39418 PF00628 PHD 1.90E-10 CL0390 Sed TR