Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed08g2156 | ATGGCTGGTGGTAGAAGAAAAAGGAGGCAGCATTTCAGAAGGATTCATGCTTTTCCTTGTGGGAGAGCTTCATTCAAAGATGAACACTCTTTAATTGGAGGGCCTGGTTTTTCAAGGGTAGTTTACTGTAATGATCATGATAGTTTTGAGGCCAGTCTTCTCAATTATGGGGGCAATTATGTCAAAACTTCAAAGTATACCATTGCTTCATTCTTCCCCAAATCTTTGTTTGAGCAATTCAGAAGGGTTGCCAACTTGTATTTCCTTCTTTGTGCTTTGCTTTCCTTTAGCCCTCTTTCGCCGTATTCGCCGGTCAGTAATGTTCTTCCTCTTGTTGTTGTTATTGGTGCCACCATGGGTAAAGAGGCTCATGAAGATTGGAAGAGAACCAAACAGGATATGGAGATGAATAATAGGATGGTGAAAGTACATATTCGAGATGGCCAGTTTGTCGAAACTAAATGGATGGACTTGAAGGTTGGTGATGTTGTTAAAGTGGAGAAGGATGAATTCTTCCCTGCTGATCTCATTTTGCTTTCGTCAAGCTACGAGGAAGCTATTTGCTATGTTGAGACAATGAACCTCGACGGGGAAACGAATTTGAAGCTGAAAAACGCATTAGAAGCAAGCTCGAACTTACACGAAGATTCGAGATTCCAGAATTTCAAGGCTATAATAAAATGTGAAGACCCCAATGCAAATTTGTATTCCTTTGTAGGCAGTATGGAGCTTGAAGAGCAGCCACACCCCCTTAGCCCTCAACAGCTTCTCCTTCGGGACTCGAAGCTGCGAAACACGGATTTTATATATGGTGTAGTGATCTTCACTGGTCATGATACAAAGGTTATGCAGAACTCAACTGCTCCTCCTTCCAAGAGAAGCAAGATTGAGAAGAGGATGGATAAGATTGTGTTCTTCCTGTTTGCTCTATTGGTTTCTATATCAATTGCCGGGTCAATGTACTTCGGAGTTTCAACTAGAGACGATATAAAGAATGGAAAAACTACGAGATGGTACCTTAGGCCGGACGATACGACAATGTACTACGACCCAAAAAACGCTACAGCTGCAGCAATATTGCAATTTTTTACTGCTCTTATGCTGTTTAGCTATTTGATTCCCATATCATTGTATGTGTCTATAGAAATTGTCAAAGTTATGCAGAGTGCCTTTATCAACCAAGATAGACATATGTACCATGAGGAAACGGATAAGCCAGCTCATGCTCGTACCTCAAATTTGAATGAAGAGCTTGGCCAAGTTGGCACCATACTTTCGGATAAAACGGGGACATTGACCTGCAATTCGATGGAGTTCATCAAGTGTTCGGTCGGCGGGACTGCTTATGGCCGAGGAATTACCGAAGTAGAGAGAGCTTTTGCAAAAAGAAAGGATCCAACTTCACCTCAATATTTAGCGACCAACAATGCACATATTAGCAGCGATAAAAAACCAACCATTAAGGGGTTCAACTTCAAGGATGAAAGAATTATGGATGGTAATTGGGCGAAGGAGCCTCGAGCCGACGTAATCGAGAAGTTCCTGCAGTTACTGGCCATCTGCCACACTGCATTGCCAGAAATTGATGAAGACACTGGAAAAATTTCTTATGAAGCTGAATCACCAGATGAGGCAGCTTTTGTGATTGCATCCAGAGAATTTGGTTTTGAATTCTATGAGAGGACTCAGACAAGCGTTTCGTTGCGGGAGTTTGACCCGGTCTCCGGAAAAAAAGTTGAAAGATCATATCAACTATTGGATATTTTGGAATTTAACAGCACAAGAAAGAGGATGTCTGTGATTGTAAGAAATCCGAAAGGACAGCTATTACTACTTTGTAAAGGAGCTGACAGTGTTATGTTTGAAAGACTTGCAAAGAATGCAAGTGAGTTTGAAGAAAAGACAAAGGTGCAAATCAACGAGTACGCCGATGCCGGTCTAAGAACTTTGGTGCTTGCGTACCGTGAGCTGAAGGAGGGGGAATTTAATACATTTCATCAAGAATTCATCAAAGCCAAAAACACAGTGAGTGAGAATCGCGAAGACATAATCGATCAGTTAACAGAAAGCGTCGAGAAAGATTTGATTCTTCTTGGTGCTACAGCAGTTGAAGATAAGCTTCAAAATGGGGTTCCTGAATGCATTGACAAACTTGCTCAGGCTGGAATTAAAATATGGGTTCTGACTGGGGATAAAATGGAAACAGCAATCAACATTGGATTTGCTTGTAGCTTACTTAGACAAGGAATGAAGCAAATAGTTATCAGCTCAGAGACTCCAGAAGGAAAAGCTTTAGACAAAGTCGAAGAAGCTGACAAATCAGCAGCCATCAAGGCGTTTAAGGCAAGTGTGACTCAGCAACTAACTGGTGCAAAAGCATTACTTTCGACTTCGGGCAAAAACCCGGAAGCGTTGGCTTTGATAATTGATGGAAAGTCCCTCACATATGCTTTGGAGGATGATGTGAAGGACCTGTTTTTGGAGCTTGCAATTGGTTGTGCTTCAGTTATATGCTGCAGATCATCTCCTAAACAGAAAGCACAAGTTACCCAATTGGTTAAGGTTAAAACAGGCACCACCACTCTAGCAGTTGGTGATGGTGCAAATGATGTTGGAATGCTCCAAGAAGCGGATATCGGGATCGGTATTAGCGGTGTGGAAGGGATGCAGGCAGTCATGTCAAGTGACATTGCAATCGCACAGTTTCGATATTTGGAGCGCCTTCTTCTTGTACATGGACATTGGTGTTACAGGAGAATCTCTTCCATGATATGCTATTTCTTCTACAAGAACATTGTTTTTGGGTTCACTCTCTTCTTCTTTGAGTTGTTTGCATCGTTCGCCGGCCAACCTGTATACAATGATTGGTTCCTTTCATTTTACAACGTCTTCTTTACTTCTCTCCCTGTAATCGCATTGGGAGTGTTCGATCAGGACGTCTCGTCTCGGTACTGTCTCAAGTTCCCTCTTTTGTACCAAGAAGGTGTCCAAAATGTCTTATTTAGTTGGGTTCGAGTTATCGGTTGGGTGCTCAACGGGCTACTAAGTTCTATCATCATCTTCATCTTTTGTGTTGGGGCCATGGAACATCAAGCCTTCCGCAGTAGTGGAGAGGTCGTTGGGTTGGAAATTCTCGGCGCCACCATGTACACTTGTGTTGTTTGGGTTGTAAACTGTCAAATGGCATTGTCCATAAGTTACTTCACATACATTCAACATCTTTTCATCTGGGGCAGCATTGTTCTCTGGTACTTATTCCTTATGGAATATGGAGCTATAAACCCAACCATATCAACCACTGCATTTCAAGTCTTTCTCGAGGCCTGTGCCCCGGCACCGTCGTTTTGGATCCTCACCCTATTAGCTCTAGGCACTTCCCTTCTCCCATACTTCGCCTACGCATCGATCCAGATGCGATTTTTCCCAATGTACCATCAAATGATTCAATGGATGAAAATAGATGGGCAGTCAAACGATCCAGAATACTGTCAAGTAGTGAGACAGAGATCGCTACGATACACGACAGTCGGTTACACAGCTCGGTTTGAAGTATCAAAGCATTTCGATGAAATCCCAGAAATCAACAGCCATTAG | 3594 | 42.54 | MAGGRRKRRQHFRRIHAFPCGRASFKDEHSLIGGPGFSRVVYCNDHDSFEASLLNYGGNYVKTSKYTIASFFPKSLFEQFRRVANLYFLLCALLSFSPLSPYSPVSNVLPLVVVIGATMGKEAHEDWKRTKQDMEMNNRMVKVHIRDGQFVETKWMDLKVGDVVKVEKDEFFPADLILLSSSYEEAICYVETMNLDGETNLKLKNALEASSNLHEDSRFQNFKAIIKCEDPNANLYSFVGSMELEEQPHPLSPQQLLLRDSKLRNTDFIYGVVIFTGHDTKVMQNSTAPPSKRSKIEKRMDKIVFFLFALLVSISIAGSMYFGVSTRDDIKNGKTTRWYLRPDDTTMYYDPKNATAAAILQFFTALMLFSYLIPISLYVSIEIVKVMQSAFINQDRHMYHEETDKPAHARTSNLNEELGQVGTILSDKTGTLTCNSMEFIKCSVGGTAYGRGITEVERAFAKRKDPTSPQYLATNNAHISSDKKPTIKGFNFKDERIMDGNWAKEPRADVIEKFLQLLAICHTALPEIDEDTGKISYEAESPDEAAFVIASREFGFEFYERTQTSVSLREFDPVSGKKVERSYQLLDILEFNSTRKRMSVIVRNPKGQLLLLCKGADSVMFERLAKNASEFEEKTKVQINEYADAGLRTLVLAYRELKEGEFNTFHQEFIKAKNTVSENREDIIDQLTESVEKDLILLGATAVEDKLQNGVPECIDKLAQAGIKIWVLTGDKMETAINIGFACSLLRQGMKQIVISSETPEGKALDKVEEADKSAAIKAFKASVTQQLTGAKALLSTSGKNPEALALIIDGKSLTYALEDDVKDLFLELAIGCASVICCRSSPKQKAQVTQLVKVKTGTTTLAVGDGANDVGMLQEADIGIGISGVEGMQAVMSSDIAIAQFRYLERLLLVHGHWCYRRISSMICYFFYKNIVFGFTLFFFELFASFAGQPVYNDWFLSFYNVFFTSLPVIALGVFDQDVSSRYCLKFPLLYQEGVQNVLFSWVRVIGWVLNGLLSSIIIFIFCVGAMEHQAFRSSGEVVGLEILGATMYTCVVWVVNCQMALSISYFTYIQHLFIWGSIVLWYLFLMEYGAINPTISTTAFQVFLEACAPAPSFWILTLLALGTSLLPYFAYASIQMRFFPMYHQMIQWMKIDGQSNDPEYCQVVRQRSLRYTTVGYTARFEVSKHFDEIPEINSH | 1197 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 35485619 | 35491469 | - | Sed0021378.1 | Sed08g2156 | 723932 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed08g2156 | 1197 | Pfam | Phospholipid-translocating ATPase N-terminal | 41 | 107 | IPR032631 | - | |
Sed08g2156 | 1197 | SFLD | C1.7: P-type atpase like | 407 | 915 | - | - | |
Sed08g2156 | 1197 | NCBIfam | HAD-IC family P-type ATPase | 830 | 945 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
Sed08g2156 | 1197 | PRINTS | P-type cation-transporting ATPase superfamily signature | 864 | 883 | - | - | |
Sed08g2156 | 1197 | PRINTS | P-type cation-transporting ATPase superfamily signature | 425 | 439 | - | - | |
Sed08g2156 | 1197 | Pfam | Phospholipid-translocating P-type ATPase C-terminal | 892 | 1142 | IPR032630 | - | |
Sed08g2156 | 1197 | NCBIfam | phospholipid-translocating P-type ATPase | 56 | 1149 | IPR006539 | GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro) | |
Sed08g2156 | 1197 | PANTHER | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE | 34 | 1146 | - | GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER) | |
Sed08g2156 | 1197 | FunFam | Phospholipid-transporting ATPase | 698 | 904 | - | - | |
Sed08g2156 | 1197 | Pfam | Cation transport ATPase (P-type) | 520 | 624 | - | - | |
Sed08g2156 | 1197 | CDD | P-type_ATPase_APLT_Dnf-like | 58 | 1024 | - | - | |
Sed08g2156 | 1197 | SFLD | p-type atpase | 407 | 915 | IPR044492 | - | |
Sed08g2156 | 1197 | Gene3D | - | 115 | 287 | - | - | |
Sed08g2156 | 1197 | FunFam | Phospholipid-transporting ATPase | 540 | 698 | - | - | |
Sed08g2156 | 1197 | Pfam | haloacid dehalogenase-like hydrolase | 629 | 783 | - | - | |
Sed08g2156 | 1197 | Gene3D | - | 699 | 904 | IPR023214 | - | |
Sed08g2156 | 1197 | SUPERFAMILY | Calcium ATPase, transduction domain A | 143 | 285 | IPR008250 | - | |
Sed08g2156 | 1197 | SUPERFAMILY | HAD-like | 420 | 919 | IPR036412 | - | |
Sed08g2156 | 1197 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 481 | 700 | IPR023299 | GO:0000166(InterPro) | |
Sed08g2156 | 1197 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 47 | 1142 | IPR023298 | - | |
Sed08g2156 | 1197 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 427 | 433 | IPR018303 | - | |
Sed08g2156 | 1197 | Gene3D | - | 549 | 698 | IPR023299 | GO:0000166(InterPro) | |
Sed08g2156 | 1197 | FunFam | Phospholipid-transporting ATPase | 117 | 287 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed08g2156 | Sed-Chr8:35485619 | Sed11g1728 | Sed-Chr11:32384420 | 0.00E+00 | dispersed | |
Sed01g2261 | Sed-Chr1:17127065 | Sed08g2156 | Sed-Chr8:35485619 | 0.00E+00 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed08g2156 | K01530 | - | csv:101209427 | 2083.53 |