Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2156 ATGGCTGGTGGTAGAAGAAAAAGGAGGCAGCATTTCAGAAGGATTCATGCTTTTCCTTGTGGGAGAGCTTCATTCAAAGATGAACACTCTTTAATTGGAGGGCCTGGTTTTTCAAGGGTAGTTTACTGTAATGATCATGATAGTTTTGAGGCCAGTCTTCTCAATTATGGGGGCAATTATGTCAAAACTTCAAAGTATACCATTGCTTCATTCTTCCCCAAATCTTTGTTTGAGCAATTCAGAAGGGTTGCCAACTTGTATTTCCTTCTTTGTGCTTTGCTTTCCTTTAGCCCTCTTTCGCCGTATTCGCCGGTCAGTAATGTTCTTCCTCTTGTTGTTGTTATTGGTGCCACCATGGGTAAAGAGGCTCATGAAGATTGGAAGAGAACCAAACAGGATATGGAGATGAATAATAGGATGGTGAAAGTACATATTCGAGATGGCCAGTTTGTCGAAACTAAATGGATGGACTTGAAGGTTGGTGATGTTGTTAAAGTGGAGAAGGATGAATTCTTCCCTGCTGATCTCATTTTGCTTTCGTCAAGCTACGAGGAAGCTATTTGCTATGTTGAGACAATGAACCTCGACGGGGAAACGAATTTGAAGCTGAAAAACGCATTAGAAGCAAGCTCGAACTTACACGAAGATTCGAGATTCCAGAATTTCAAGGCTATAATAAAATGTGAAGACCCCAATGCAAATTTGTATTCCTTTGTAGGCAGTATGGAGCTTGAAGAGCAGCCACACCCCCTTAGCCCTCAACAGCTTCTCCTTCGGGACTCGAAGCTGCGAAACACGGATTTTATATATGGTGTAGTGATCTTCACTGGTCATGATACAAAGGTTATGCAGAACTCAACTGCTCCTCCTTCCAAGAGAAGCAAGATTGAGAAGAGGATGGATAAGATTGTGTTCTTCCTGTTTGCTCTATTGGTTTCTATATCAATTGCCGGGTCAATGTACTTCGGAGTTTCAACTAGAGACGATATAAAGAATGGAAAAACTACGAGATGGTACCTTAGGCCGGACGATACGACAATGTACTACGACCCAAAAAACGCTACAGCTGCAGCAATATTGCAATTTTTTACTGCTCTTATGCTGTTTAGCTATTTGATTCCCATATCATTGTATGTGTCTATAGAAATTGTCAAAGTTATGCAGAGTGCCTTTATCAACCAAGATAGACATATGTACCATGAGGAAACGGATAAGCCAGCTCATGCTCGTACCTCAAATTTGAATGAAGAGCTTGGCCAAGTTGGCACCATACTTTCGGATAAAACGGGGACATTGACCTGCAATTCGATGGAGTTCATCAAGTGTTCGGTCGGCGGGACTGCTTATGGCCGAGGAATTACCGAAGTAGAGAGAGCTTTTGCAAAAAGAAAGGATCCAACTTCACCTCAATATTTAGCGACCAACAATGCACATATTAGCAGCGATAAAAAACCAACCATTAAGGGGTTCAACTTCAAGGATGAAAGAATTATGGATGGTAATTGGGCGAAGGAGCCTCGAGCCGACGTAATCGAGAAGTTCCTGCAGTTACTGGCCATCTGCCACACTGCATTGCCAGAAATTGATGAAGACACTGGAAAAATTTCTTATGAAGCTGAATCACCAGATGAGGCAGCTTTTGTGATTGCATCCAGAGAATTTGGTTTTGAATTCTATGAGAGGACTCAGACAAGCGTTTCGTTGCGGGAGTTTGACCCGGTCTCCGGAAAAAAAGTTGAAAGATCATATCAACTATTGGATATTTTGGAATTTAACAGCACAAGAAAGAGGATGTCTGTGATTGTAAGAAATCCGAAAGGACAGCTATTACTACTTTGTAAAGGAGCTGACAGTGTTATGTTTGAAAGACTTGCAAAGAATGCAAGTGAGTTTGAAGAAAAGACAAAGGTGCAAATCAACGAGTACGCCGATGCCGGTCTAAGAACTTTGGTGCTTGCGTACCGTGAGCTGAAGGAGGGGGAATTTAATACATTTCATCAAGAATTCATCAAAGCCAAAAACACAGTGAGTGAGAATCGCGAAGACATAATCGATCAGTTAACAGAAAGCGTCGAGAAAGATTTGATTCTTCTTGGTGCTACAGCAGTTGAAGATAAGCTTCAAAATGGGGTTCCTGAATGCATTGACAAACTTGCTCAGGCTGGAATTAAAATATGGGTTCTGACTGGGGATAAAATGGAAACAGCAATCAACATTGGATTTGCTTGTAGCTTACTTAGACAAGGAATGAAGCAAATAGTTATCAGCTCAGAGACTCCAGAAGGAAAAGCTTTAGACAAAGTCGAAGAAGCTGACAAATCAGCAGCCATCAAGGCGTTTAAGGCAAGTGTGACTCAGCAACTAACTGGTGCAAAAGCATTACTTTCGACTTCGGGCAAAAACCCGGAAGCGTTGGCTTTGATAATTGATGGAAAGTCCCTCACATATGCTTTGGAGGATGATGTGAAGGACCTGTTTTTGGAGCTTGCAATTGGTTGTGCTTCAGTTATATGCTGCAGATCATCTCCTAAACAGAAAGCACAAGTTACCCAATTGGTTAAGGTTAAAACAGGCACCACCACTCTAGCAGTTGGTGATGGTGCAAATGATGTTGGAATGCTCCAAGAAGCGGATATCGGGATCGGTATTAGCGGTGTGGAAGGGATGCAGGCAGTCATGTCAAGTGACATTGCAATCGCACAGTTTCGATATTTGGAGCGCCTTCTTCTTGTACATGGACATTGGTGTTACAGGAGAATCTCTTCCATGATATGCTATTTCTTCTACAAGAACATTGTTTTTGGGTTCACTCTCTTCTTCTTTGAGTTGTTTGCATCGTTCGCCGGCCAACCTGTATACAATGATTGGTTCCTTTCATTTTACAACGTCTTCTTTACTTCTCTCCCTGTAATCGCATTGGGAGTGTTCGATCAGGACGTCTCGTCTCGGTACTGTCTCAAGTTCCCTCTTTTGTACCAAGAAGGTGTCCAAAATGTCTTATTTAGTTGGGTTCGAGTTATCGGTTGGGTGCTCAACGGGCTACTAAGTTCTATCATCATCTTCATCTTTTGTGTTGGGGCCATGGAACATCAAGCCTTCCGCAGTAGTGGAGAGGTCGTTGGGTTGGAAATTCTCGGCGCCACCATGTACACTTGTGTTGTTTGGGTTGTAAACTGTCAAATGGCATTGTCCATAAGTTACTTCACATACATTCAACATCTTTTCATCTGGGGCAGCATTGTTCTCTGGTACTTATTCCTTATGGAATATGGAGCTATAAACCCAACCATATCAACCACTGCATTTCAAGTCTTTCTCGAGGCCTGTGCCCCGGCACCGTCGTTTTGGATCCTCACCCTATTAGCTCTAGGCACTTCCCTTCTCCCATACTTCGCCTACGCATCGATCCAGATGCGATTTTTCCCAATGTACCATCAAATGATTCAATGGATGAAAATAGATGGGCAGTCAAACGATCCAGAATACTGTCAAGTAGTGAGACAGAGATCGCTACGATACACGACAGTCGGTTACACAGCTCGGTTTGAAGTATCAAAGCATTTCGATGAAATCCCAGAAATCAACAGCCATTAG 3594 42.54 MAGGRRKRRQHFRRIHAFPCGRASFKDEHSLIGGPGFSRVVYCNDHDSFEASLLNYGGNYVKTSKYTIASFFPKSLFEQFRRVANLYFLLCALLSFSPLSPYSPVSNVLPLVVVIGATMGKEAHEDWKRTKQDMEMNNRMVKVHIRDGQFVETKWMDLKVGDVVKVEKDEFFPADLILLSSSYEEAICYVETMNLDGETNLKLKNALEASSNLHEDSRFQNFKAIIKCEDPNANLYSFVGSMELEEQPHPLSPQQLLLRDSKLRNTDFIYGVVIFTGHDTKVMQNSTAPPSKRSKIEKRMDKIVFFLFALLVSISIAGSMYFGVSTRDDIKNGKTTRWYLRPDDTTMYYDPKNATAAAILQFFTALMLFSYLIPISLYVSIEIVKVMQSAFINQDRHMYHEETDKPAHARTSNLNEELGQVGTILSDKTGTLTCNSMEFIKCSVGGTAYGRGITEVERAFAKRKDPTSPQYLATNNAHISSDKKPTIKGFNFKDERIMDGNWAKEPRADVIEKFLQLLAICHTALPEIDEDTGKISYEAESPDEAAFVIASREFGFEFYERTQTSVSLREFDPVSGKKVERSYQLLDILEFNSTRKRMSVIVRNPKGQLLLLCKGADSVMFERLAKNASEFEEKTKVQINEYADAGLRTLVLAYRELKEGEFNTFHQEFIKAKNTVSENREDIIDQLTESVEKDLILLGATAVEDKLQNGVPECIDKLAQAGIKIWVLTGDKMETAINIGFACSLLRQGMKQIVISSETPEGKALDKVEEADKSAAIKAFKASVTQQLTGAKALLSTSGKNPEALALIIDGKSLTYALEDDVKDLFLELAIGCASVICCRSSPKQKAQVTQLVKVKTGTTTLAVGDGANDVGMLQEADIGIGISGVEGMQAVMSSDIAIAQFRYLERLLLVHGHWCYRRISSMICYFFYKNIVFGFTLFFFELFASFAGQPVYNDWFLSFYNVFFTSLPVIALGVFDQDVSSRYCLKFPLLYQEGVQNVLFSWVRVIGWVLNGLLSSIIIFIFCVGAMEHQAFRSSGEVVGLEILGATMYTCVVWVVNCQMALSISYFTYIQHLFIWGSIVLWYLFLMEYGAINPTISTTAFQVFLEACAPAPSFWILTLLALGTSLLPYFAYASIQMRFFPMYHQMIQWMKIDGQSNDPEYCQVVRQRSLRYTTVGYTARFEVSKHFDEIPEINSH 1197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 35485619 35491469 - Sed0021378.1 Sed08g2156 723932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2156 1197 Pfam Phospholipid-translocating ATPase N-terminal 41 107 IPR032631 -
Sed08g2156 1197 SFLD C1.7: P-type atpase like 407 915 - -
Sed08g2156 1197 NCBIfam HAD-IC family P-type ATPase 830 945 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed08g2156 1197 PRINTS P-type cation-transporting ATPase superfamily signature 864 883 - -
Sed08g2156 1197 PRINTS P-type cation-transporting ATPase superfamily signature 425 439 - -
Sed08g2156 1197 Pfam Phospholipid-translocating P-type ATPase C-terminal 892 1142 IPR032630 -
Sed08g2156 1197 NCBIfam phospholipid-translocating P-type ATPase 56 1149 IPR006539 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro)
Sed08g2156 1197 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 34 1146 - GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER)
Sed08g2156 1197 FunFam Phospholipid-transporting ATPase 698 904 - -
Sed08g2156 1197 Pfam Cation transport ATPase (P-type) 520 624 - -
Sed08g2156 1197 CDD P-type_ATPase_APLT_Dnf-like 58 1024 - -
Sed08g2156 1197 SFLD p-type atpase 407 915 IPR044492 -
Sed08g2156 1197 Gene3D - 115 287 - -
Sed08g2156 1197 FunFam Phospholipid-transporting ATPase 540 698 - -
Sed08g2156 1197 Pfam haloacid dehalogenase-like hydrolase 629 783 - -
Sed08g2156 1197 Gene3D - 699 904 IPR023214 -
Sed08g2156 1197 SUPERFAMILY Calcium ATPase, transduction domain A 143 285 IPR008250 -
Sed08g2156 1197 SUPERFAMILY HAD-like 420 919 IPR036412 -
Sed08g2156 1197 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 481 700 IPR023299 GO:0000166(InterPro)
Sed08g2156 1197 SUPERFAMILY Calcium ATPase, transmembrane domain M 47 1142 IPR023298 -
Sed08g2156 1197 ProSitePatterns E1-E2 ATPases phosphorylation site. 427 433 IPR018303 -
Sed08g2156 1197 Gene3D - 549 698 IPR023299 GO:0000166(InterPro)
Sed08g2156 1197 FunFam Phospholipid-transporting ATPase 117 287 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2156 Sed-Chr8:35485619 Sed11g1728 Sed-Chr11:32384420 0.00E+00 dispersed
Sed01g2261 Sed-Chr1:17127065 Sed08g2156 Sed-Chr8:35485619 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2156 K01530 - csv:101209427 2083.53