Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2159 ATGGCTTCTAATTTCCTCTGTTTTTCTCTTCCACTTGCATTGTTTTTATCACTCCATTTCTTCTCTGCAACTTCAACTGAATTCCTTGTTGGTGATGAAGATGGTTGGGCTGTCCCTGACCCAAAACAAGCTGATACATACAACAAATGGGCCTCACACAACAGATTCAATGTTAATGACACTGTCCGTTTCAAGTACGAGAAAGATTCAGTGATGGAGGTGACAGAGGAAGAGTACAAGCAATGCCTTTCTTCAAAGCCTGTGATGTATGGCAGCAATGGTGACACAGTGGTGAAGCTTGACAGAGCAGGGCTCTTCTATTTCATCAGTGGAGTTTCAGGCCACTGTCACAAAGGCCAGAGAATGATAATCAAAGTGTTGGAACCTCTCGCCCCTCCTCACCCACCCACTGTTGCTCCACCCCATACCAACAACAGTGCAGCCTCTGTTTCATTTCCAATCATGGGGATGTTCTTCATGTTCTTTGTTTCCTTTCTCTTCATTTGA 507 44.38 MASNFLCFSLPLALFLSLHFFSATSTEFLVGDEDGWAVPDPKQADTYNKWASHNRFNVNDTVRFKYEKDSVMEVTEEEYKQCLSSKPVMYGSNGDTVVKLDRAGLFYFISGVSGHCHKGQRMIIKVLEPLAPPHPPTVAPPHTNNSAASVSFPIMGMFFMFFVSFLFI 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 35527636 35529744 - Sed0027059.1 Sed08g2159 723935

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2159 168 CDD OsENODL1_like 26 127 IPR041846 -
Sed08g2159 168 FunFam Early nodulin-like protein 1 25 130 - -
Sed08g2159 168 PANTHER BLUE COPPER PROTEIN 20 135 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
Sed08g2159 168 SUPERFAMILY Cupredoxins 25 127 IPR008972 -
Sed08g2159 168 Pfam Plastocyanin-like domain 45 120 IPR003245 GO:0009055(InterPro)
Sed08g2159 168 Gene3D - 24 129 IPR008972 -
Sed08g2159 168 ProSiteProfiles Phytocyanin domain profile. 26 128 IPR003245 GO:0009055(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2159 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2159 Sed-Chr8:35527636 Sed11g1876 Sed-Chr11:33348267 5.60E-32 dispersed
Sed04g3189 Sed-Chr4:42585570 Sed08g2159 Sed-Chr8:35527636 6.00E-19 transposed
Sed07g1925 Sed-Chr7:33537634 Sed08g2159 Sed-Chr8:35527636 2.10E-17 transposed
Sed01g1702 Sed-Chr1:12362342 Sed08g2159 Sed-Chr8:35527636 3.00E-57 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g376 . . . . . . . . Cmo13g01087 . . . . . . Cpe20g00102 . . . . . . . . . . . . . . . . . . . Lsi02g00157 Csa01g00642 Chy12g01460 Cme12g01900 . . . Bda14g00907 . Bpe15g00551 Bma03g00881 . Sed08g2159 . . Cma13g01046 Cma18g00027 Car13g00879 . . . Bhi08g01036 Tan05g2299 Cmetu12g1793 Lac10g0209 Hepe07g2420 . . Cla04g01116 Cam04g1169 Cec01g1680 Cco01g1728 Clacu04g1197 Cmu04g1176 Cre01g1475 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed08g2159 . 12 156 Phytocyanin Superfamily AT1G48940 52.0 1.2e-37 154.1
Sed11g1139 . 11 171 Phytocyanin Superfamily AT2G25060 52.1 8.5e-42 167.9
Sed07g2613 . 28 182 Phytocyanin Superfamily AT5G15350 52.9 3.5e-45 179.1
Sed11g1139 . 16 171 Phytocyanin Superfamily AT4G31840 51.3 1.5e-43 173.7
Sed08g2159 . 20 128 Phytocyanin Superfamily AT3G18590 64.5 1.9e-36 150.2
Sed08g2159 . 20 128 Phytocyanin Superfamily AT3G18590 64.5 1.9e-36 150.2
Sed08g2159 . 12 156 Phytocyanin Superfamily AT1G48940 52.0 1.2e-37 154.1
Sed11g1139 . 10 170 Phytocyanin Superfamily AT5G25090 54.2 1.2e-40 164.1
Sed11g1139 . 11 171 Phytocyanin Superfamily AT2G25060 52.1 8.5e-42 167.9
Sed11g1139 . 16 171 Phytocyanin Superfamily AT4G31840 51.3 1.5e-43 173.7
Sed07g2613 . 28 182 Phytocyanin Superfamily AT5G15350 52.9 3.5e-45 179.1
Sed01g3239 . 9 229 Phytocyanin Superfamily AT1G08500 57.2 3.9e-60 229.2
Sed08g1028 . 32 138 Phytocyanin Superfamily AT2G27035 57.0 3.3e-37 152.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000973 5 4 1 1 2 2 4 2 2 3 3 2 3 3 3 3 2 2 5 3 2 4 3 3 2 3 2 3 2 3 82