Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2159 ATGGCTTCTAATTTCCTCTGTTTTTCTCTTCCACTTGCATTGTTTTTATCACTCCATTTCTTCTCTGCAACTTCAACTGAATTCCTTGTTGGTGATGAAGATGGTTGGGCTGTCCCTGACCCAAAACAAGCTGATACATACAACAAATGGGCCTCACACAACAGATTCAATGTTAATGACACTGTCCGTTTCAAGTACGAGAAAGATTCAGTGATGGAGGTGACAGAGGAAGAGTACAAGCAATGCCTTTCTTCAAAGCCTGTGATGTATGGCAGCAATGGTGACACAGTGGTGAAGCTTGACAGAGCAGGGCTCTTCTATTTCATCAGTGGAGTTTCAGGCCACTGTCACAAAGGCCAGAGAATGATAATCAAAGTGTTGGAACCTCTCGCCCCTCCTCACCCACCCACTGTTGCTCCACCCCATACCAACAACAGTGCAGCCTCTGTTTCATTTCCAATCATGGGGATGTTCTTCATGTTCTTTGTTTCCTTTCTCTTCATTTGA 507 44.38 MASNFLCFSLPLALFLSLHFFSATSTEFLVGDEDGWAVPDPKQADTYNKWASHNRFNVNDTVRFKYEKDSVMEVTEEEYKQCLSSKPVMYGSNGDTVVKLDRAGLFYFISGVSGHCHKGQRMIIKVLEPLAPPHPPTVAPPHTNNSAASVSFPIMGMFFMFFVSFLFI 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 35527636 35529744 - Sed0027059.1 Sed08g2159 723935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2159 168 CDD OsENODL1_like 26 127 IPR041846 -
Sed08g2159 168 FunFam Early nodulin-like protein 1 25 130 - -
Sed08g2159 168 PANTHER BLUE COPPER PROTEIN 20 135 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
Sed08g2159 168 SUPERFAMILY Cupredoxins 25 127 IPR008972 -
Sed08g2159 168 Pfam Plastocyanin-like domain 45 120 IPR003245 GO:0009055(InterPro)
Sed08g2159 168 Gene3D - 24 129 IPR008972 -
Sed08g2159 168 ProSiteProfiles Phytocyanin domain profile. 26 128 IPR003245 GO:0009055(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2159 Sed-Chr8:35527636 Sed11g1876 Sed-Chr11:33348267 5.60E-32 dispersed
Sed04g3189 Sed-Chr4:42585570 Sed08g2159 Sed-Chr8:35527636 6.00E-19 transposed
Sed07g1925 Sed-Chr7:33537634 Sed08g2159 Sed-Chr8:35527636 2.10E-17 transposed
Sed01g1702 Sed-Chr1:12362342 Sed08g2159 Sed-Chr8:35527636 3.00E-57 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2159 - - - 0.0