Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2160 ATGACGCAGGATTCAGAGAAGAGGTTCCATTCCATCATGGATAAGCTCTTTCACAACTCTAATTCCGCATCTTCCCCGCCCTCCTCCTCCAACTCCAGTCCATCCGGGGTACAACTTTCGAGAGGGAAGAAGCGTCCATATTCTTCGTCTGTTCTTGTGGTGGGAGAGTTGAGGTCAAAAAGTGATGTAATTGAGGCATTGCAGAAGCATTCATCAGCTTCTGCTCGATCTTCTCATGCTCCATTGTGTAGGCCTTGGGACCGTAGTGATCTTTCAAAAAGATTAACCACATTCAAGTCGATGACATGGTTTGGTAAACCTAAGGTGGTAAATGCTATAAATTGTGCTAGAAGAGGTTGGATCAATGTAGATATGGACACTATTGCCTGTGAATCATGTGGAGCACGTCTCCTTTTCTCTACTCCATCTTCATGGAATCAGCAACAAGTTGAGAAGGCGGCGTTGGTATTCAGCTTAAAGCTGGATGGTGGGCACAAGTTACTCTGTCCATGGATAGATAATGCCTGTGATGAAACATTGGCTTATTTTCCTCCTACTCCTTCTCCAGTTTTGGTCAATAAATTTAGGGAGCGTTGTTCTATGTTATCACATCTTTCATCACTTCCTGTTATTTCTTCTTCGTTTCTTAAATGGATGAAGAGTTCCCTCCTCAAGAAAATTCTTGAAGAATTACCCTTGAAGGAGTTTGGTAATGAGTCTCTTAACCAATCTGAAATCGAGTACCTAGAAGATGGACATGTCTCAGATACTGCTAAAGCATATCATCAGGCTCTACAGCTAATTAGCTTGTTTGGATGGGAACCTCGTTCACTGCCCTATGTAGTTGACTGCAAGACAGGTTCAGATCAATCTCTCAAGAAATCCACCTCTTTGGATTCGCGTCCTGCTGTAAATTTATACTCTGCTGCTTCCAAAGAAAATGTAGATGGGAATAGAATTTCTGAGATTCCAAGTGAATTGCAATCTCTGCCCAATTCTGTTGTTTTAGATTGCAGGATCTGTGGAGCTAGCGTTGGATTATGGACTTTCAACACAATTCCTAAACCTGTGGAAATCATCAGATTGGTTGGACCCACTGAATTGAACGGTGAGTCGGGCACTCACGGCTCGGGCAGTAAAAGTGGCATCAATCATGCAGGTATTGGTAATGTTGGAGTATCATCAAAAGAAAGCATACCAAATTTAGCTTCAACAATCGCAGGGGGGCCTACCCCTGCACGACAGAGTTTCAAGTCCACCATCACTTTGCCTGTCATTGGCCAAAATTTAAGGGCTAGGTTATTCGATAATGAAAAAATTTGTGACCGGATGGATAACAACCAAGAAATGGTCCACACCGGCTCCTTGGATAAAAATATGTTACAAGATAGCAAAAACAATGAAGATAGCACCCTTCATGGACAGTCTGGTCAGCCAGAAGACATACTATTATTCGAAAATCAAACACTTGATCGTGGATGTGGTACTACCGGTGATGATCATACCCCTGTATTGGAAGGTACGAGTGTTACGGATCAGGGAGCCTTACCTGAATCTAATTCGAATGGTTCAACTGTACAAACTCAAGCAAAGATGGCAGAGATTGTTCCTGGGCAGGAAATTGAAGTGGTGAAGAATGCTGAGAATTCAATGCAGTTGGATTCTGGAAGCAAAGCAGCAGATCTGCATCCTTCTTCTCCTGTCAATAATCCTTTGACGTCAACAGATGCTGTTATGATCACGAGTAGTGAATGCAGTGAAAAGGAGTTGCCTTCCGTTGTCTCTGACCAGTGTGATTCACAACAGGTTTCAGAAAATGATACTTCAAATAGCAAAGAGGATTCTTTGGCCAACTTACAGGTGACCCCACACAAATCCTCTTCCCTTGAAGTTGATACAAATACAGATATCGCCAGGAAGAACGACTCAGTGGAAGACAAACTTGGTTCTGATAACCACACCACCTCAGAAAACCAGGATCGTGAAGGAGGCGAAGCCAATGACAAAGTTCATACCTCCGTCAACAGCGAGCATATTACCCATGGTGAAGAGGATTACACCAAGAGTGCACCATTGGGTAATATAATGGAGTTCGATCCAATCAGGCAGCACAGGCACTTTTGCTCCTGGATTGCCACAGGGAATAAGGCACCTGGATGGAAACAAACCCTAACTGCTTTACAGCGCGAAAAAAGCTCTTCGCCACATTCTCCGAAGAACTCTCCATCAGGGTCTCTGATTAAGGTCGACGATCCCGTTAGTTCGCTTCGAAATCTATTCACATCTTCTGCAAAGAAATTGAAAAGTAGTCTTTCTAATGAGAACACCAAGCGCTAG 2337 43.39 MTQDSEKRFHSIMDKLFHNSNSASSPPSSSNSSPSGVQLSRGKKRPYSSSVLVVGELRSKSDVIEALQKHSSASARSSHAPLCRPWDRSDLSKRLTTFKSMTWFGKPKVVNAINCARRGWINVDMDTIACESCGARLLFSTPSSWNQQQVEKAALVFSLKLDGGHKLLCPWIDNACDETLAYFPPTPSPVLVNKFRERCSMLSHLSSLPVISSSFLKWMKSSLLKKILEELPLKEFGNESLNQSEIEYLEDGHVSDTAKAYHQALQLISLFGWEPRSLPYVVDCKTGSDQSLKKSTSLDSRPAVNLYSAASKENVDGNRISEIPSELQSLPNSVVLDCRICGASVGLWTFNTIPKPVEIIRLVGPTELNGESGTHGSGSKSGINHAGIGNVGVSSKESIPNLASTIAGGPTPARQSFKSTITLPVIGQNLRARLFDNEKICDRMDNNQEMVHTGSLDKNMLQDSKNNEDSTLHGQSGQPEDILLFENQTLDRGCGTTGDDHTPVLEGTSVTDQGALPESNSNGSTVQTQAKMAEIVPGQEIEVVKNAENSMQLDSGSKAADLHPSSPVNNPLTSTDAVMITSSECSEKELPSVVSDQCDSQQVSENDTSNSKEDSLANLQVTPHKSSSLEVDTNTDIARKNDSVEDKLGSDNHTTSENQDREGGEANDKVHTSVNSEHITHGEEDYTKSAPLGNIMEFDPIRQHRHFCSWIATGNKAPGWKQTLTALQREKSSSPHSPKNSPSGSLIKVDDPVSSLRNLFTSSAKKLKSSLSNENTKR 778
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 35531308 35536564 + Sed0001077.1 Sed08g2160 723936

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2160 778 MobiDBLite consensus disorder prediction 492 527 - -
Sed08g2160 778 MobiDBLite consensus disorder prediction 586 634 - -
Sed08g2160 778 PANTHER NUCLEAR-INTERACTING PARTNER OF ALK 1 765 - GO:0005634(PANTHER)
Sed08g2160 778 MobiDBLite consensus disorder prediction 727 748 - -
Sed08g2160 778 MobiDBLite consensus disorder prediction 586 686 - -
Sed08g2160 778 MobiDBLite consensus disorder prediction 15 44 - -
Sed08g2160 778 Pfam C3HC zinc finger-like 85 210 IPR012935 GO:0008270(InterPro)
Sed08g2160 778 MobiDBLite consensus disorder prediction 1 44 - -
Sed08g2160 778 MobiDBLite consensus disorder prediction 727 751 - -
Sed08g2160 778 MobiDBLite consensus disorder prediction 635 685 - -
Sed08g2160 778 MobiDBLite consensus disorder prediction 502 527 - -
Sed08g2160 778 MobiDBLite consensus disorder prediction 459 478 - -
Sed08g2160 778 MobiDBLite consensus disorder prediction 553 574 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2160 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2160 Sed-Chr8:35531308 Sed08g2651 Sed-Chr8:38673101 4.20E-50 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g471 Blo01g00927 Blo11g00228 . . . . Bma14g00950 Bma01g01517 . Cmo18g00464 . . . . . Cpe09g00745 . . . . . . . . . . . . . . . . . . Cone9ag1087 . . . . . . . Bda07g00922 Bpe02g00988 . . . Sed08g2160 . . . Cma18g00488 . . . . Bhi08g01035 Tan05g2298 Cmetu12g0465 Lac10g0210 Hepe07g2419 . . Cla03g00612 Cam03g0791 Cec03g0762 Cco03g0794 Clacu03g0657 Cmu03g1251 Cre03g1070 . Csa01g02576 . Cme12g01157
Vvi17g375 . . . . . Bpe13g00337 Bma06g00005 . Cmo13g01086 . . . . . . Cpe20g00103 . . . . . . . . . . . . . . . . Cone16ag0270 . . Lsi02g00158 Csa01g00643 Chy12g01459 Cme12g01899 . . . . . . . . Sed08g2160 . . Cma13g01045 . Car13g00878 . . . Bhi08g01035 Tan05g2298 Cmetu12g0465 Lac10g0210 Hepe07g2419 . . Cla04g01115 Cam04g1168 Cec01g1679 Cco01g1727 Clacu04g1196 Cmu04g1175 Cre01g1474 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010799 0 1 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 30