Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2161 ATGTTGCAAAGCCCCAAATTTCTCCATCCCACAAAGCTTCAACTCCCATCCACCTCTCAACCTCCAAACATCCCCATTTCCCCAAACCTTCCCTTCATCAAACAATGTTGTAGAATCTCCCGCCGGAGGCTCGCCGTTGGAAGCAACTCCCTGTTGCTTCTTCTCTTTGGCTCTCAGATTCTAGACCCATTTTACAAATCCTCCCAAGCAGAGGCTGAAGAAAGCTTGGTTGAAAATGAAGAAGAATTGCAGAAGATAGAGAGTTCCAAGGATGGCCCTCATTGCACAGAAAAGAGCCTCACCAAGCATGCATTTCTTGATATCTCCATCGATGGCGAGCCTGCCGGTCGCATTGTCATTGGGCTTTACGGCGACGACGCCCCCGCAGGAGTTGCGAGGTTTAGTAGCCTTGTGAGTGGAGCTGCAGGGGTTTCTTACAGGAGAAAAGACTTTGTGAAGATCACATCAAATTATGTTCAAAACAGTGGAGTGAGATCTTATGGAGTGGATGTTGAGCTTGCAAAGAGGACAGGGAATGAGTTAGCATCAGAGACTCTTAAAGATGAATGGGAAAGAGTGAATGAGAAGTGCCCTGGAACTAAGAACTTGGCTGGAACTGTGGGGATCATTGTTAGAGATCCTTTGAAACCACCCCCTAAGATGAAGTTGGTAGCTAGGCAAGGGAAGCTGGAGGTTGATCAGGAAGAGGTCGGAACCGAGCCGAATGGAACGGAGTTCACGATTTCTGTCAAGGATTCGCCGGAGCTGGACAATTCGGCCCTGGTGATTGGAACAGTTTTGGAAGGGATGAAAGTGTTGGAGAGGATTGCTCAAGTGAAGACAGTGAAAGAGAATACTACTTCTCCTTACTTCAGGGTGGCAAAGCTAATAGGAGATAAGAGAGCTGTTGTTGCAGAGAGAGGATTCAACCGTCCTTATTCAAAAGTGATTATCACAAACTGTGGGTTGCTTGAGAAATGA 981 47.09 MLQSPKFLHPTKLQLPSTSQPPNIPISPNLPFIKQCCRISRRRLAVGSNSLLLLLFGSQILDPFYKSSQAEAEESLVENEEELQKIESSKDGPHCTEKSLTKHAFLDISIDGEPAGRIVIGLYGDDAPAGVARFSSLVSGAAGVSYRRKDFVKITSNYVQNSGVRSYGVDVELAKRTGNELASETLKDEWERVNEKCPGTKNLAGTVGIIVRDPLKPPPKMKLVARQGKLEVDQEEVGTEPNGTEFTISVKDSPELDNSALVIGTVLEGMKVLERIAQVKTVKENTTSPYFRVAKLIGDKRAVVAERGFNRPYSKVIITNCGLLEK 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 35537969 35539405 - Sed0007811.1 Sed08g2161 723937

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2161 326 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 105 323 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Sed08g2161 326 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP26-2, CHLOROPLASTIC 7 325 IPR044185 GO:0009507(PANTHER)
Sed08g2161 326 MobiDBLite consensus disorder prediction 1 22 - -
Sed08g2161 326 Coils Coil 69 89 - -
Sed08g2161 326 Gene3D - 93 326 IPR029000 -
Sed08g2161 326 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 106 289 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Sed08g2161 326 SUPERFAMILY Cyclophilin-like 100 324 IPR029000 -
Sed08g2161 326 FunFam Peptidyl-prolyl cis-trans isomerase B 94 325 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2161 K03768 - - csv:101210168 479.559
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2161 Sed-Chr8:35537969 Sed09g0360 Sed-Chr9:3245618 8.10E-11 dispersed
Sed08g2161 Sed-Chr8:35537969 Sed07g0112 Sed-Chr7:1037100 3.60E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g374 . . . . . . . . . Cmo18g00024 . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0002 Cone19ag0003 Lsi02g00159 Csa01g00644 Chy12g01458 Cme12g01898 . . . Bda14g00908 . Bpe15g00550 Bma03g00883 . Sed08g2161 . . . . Car13g00876 Car18g00160 . . Bhi08g01195 Tan05g2296 Cmetu12g0160 Lac10g0211 Hepe07g2418 . . Cla04g01114 Cam04g1167 Cec01g1678 Cco01g1726 Clacu04g1195 Cmu04g1174 Cre01g1473 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011034 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 1 1 1 1 1 1 31