Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2182 ATGGCTGAGTTTACTGCAAACTTTCAAAGCTTAAAAGCTTCCTCTTTTCCTCTAATGGAAATAGATTCCAACCAAAATCCAAGTGTCAATTTTCTTGACAATATTCCTGTTTTGTTCAATGACAGTTTCTTTGCCAATCAAGCTCCTCCTCCTCCAAGATTCTTGGAAAATTGGGGGGAAAATCTCTTGGGAAATTTCTCACAAGCCAATCAGATTGTTACACCTGTTTTTGAGCCTGCAAATTCATATGGTAGCAAAAAAAGAAAGCTTGAAACTGATGCTAATTATGAAAGCTGCTCTGGAGATTCATCTCCTCTGGTTTCTGAAACAGAGAACAAGGCTAAAAATAGCTCTGGAAAAGGAAAGCGGTCGAAAAAAGGGAGCGAAAACGACGACGACAACCCGAGGGATGTCGTTCATGTTAGAGCTAGAAGAGGTCAAGCAACAGATAGTCACAGTGTAGCTGAAAGGGTAAGAAGAGGAAAAATCAATGAAAGATTGAGATGTTTGCAAGATATTGTCCCAGGATGCTACAAGACAATGGGAATGGCAGTGATGTTGGATGAGATAATTAATTATGTGCAGTCTTTGCAGAATCAAGTTGAGTTTCTTTCTATGAAACTCACAGCTGCAAGCTCCTATTATGACTTCAACTCAGACTCAGTTGCTGAAGACAAACTGAAGGCAAAGGAAATAAAAGATGGAAATGGAGGATTATTGGTTGGATCAACTCAACTTGGTCCCTTTGATTTGAGTTTTGGTGCTTATTCCACATTGCCATTCAACAACATATGA 795 39.25 MAEFTANFQSLKASSFPLMEIDSNQNPSVNFLDNIPVLFNDSFFANQAPPPPRFLENWGENLLGNFSQANQIVTPVFEPANSYGSKKRKLETDANYESCSGDSSPLVSETENKAKNSSGKGKRSKKGSENDDDNPRDVVHVRARRGQATDSHSVAERVRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASSYYDFNSDSVAEDKLKAKEIKDGNGGLLVGSTQLGPFDLSFGAYSTLPFNNI 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 35745054 35746603 - Sed0003130.1 Sed08g2182 723958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2182 264 MobiDBLite consensus disorder prediction 115 137 - -
Sed08g2182 264 MobiDBLite consensus disorder prediction 96 114 - -
Sed08g2182 264 MobiDBLite consensus disorder prediction 82 137 - -
Sed08g2182 264 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 145 215 IPR036638 GO:0046983(InterPro)
Sed08g2182 264 Pfam Helix-loop-helix DNA-binding domain 151 198 IPR011598 GO:0046983(InterPro)
Sed08g2182 264 Gene3D - 144 215 IPR036638 GO:0046983(InterPro)
Sed08g2182 264 FunFam transcription factor BEE 3-like 144 215 - -
Sed08g2182 264 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 147 197 IPR011598 GO:0046983(InterPro)
Sed08g2182 264 SMART finulus 153 203 IPR011598 GO:0046983(InterPro)
Sed08g2182 264 CDD bHLH_AtBPE_like 137 222 - -
Sed08g2182 264 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 85 224 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2182 Sed-Chr8:35745054 Sed12g0703 Sed-Chr12:4204407 1.40E-29 dispersed
Sed12g2081 Sed-Chr12:31556799 Sed08g2182 Sed-Chr8:35745054 5.60E-47 wgd
Sed06g1419 Sed-Chr6:38938962 Sed08g2182 Sed-Chr8:35745054 5.00E-29 wgd
Sed08g0365 Sed-Chr8:2197076 Sed08g2182 Sed-Chr8:35745054 2.00E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39423 PF00010 HLH 0.0001 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2182 - - - 0.0