Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2192 ATGGTGGGCGAAAGAAAGAGCCCTAATGAAAGAGTAAGGAAGAGTAGTGAAGAGTATTTTCCTGATTGGATATATACAAATCTTAGTGGAACTGTAAATAGATGGAGGCCATCAATGGGGCAATACAGAGGAGGAAGAAGAGATGATTCCTTCCGCCACAAGCTCGGCCAACGAGGCTTTAGCACGGTCTACAAAGGAACCATACCAGACGGCTGCGAAGTGGCGGTGAAACTTTTGAAAGAATCCAAAGAGGACGGGGAAGCTTTTATGAATGAAGTTGTTTGTATCACGAGAACTTCCCATGTCAATATAGTCGCTATCTTGGGTTTCTGCTACGAACCTAACAAAAGAGCTTTAGTTTACGAGTATATGCCCAAAGGTTCATTGGATAAATACATGTTCCATGGAGAATTACAAAAAAACAATGATGTGAAGTTGGACTGGAACATGTTGTATAACATTGTAATCGGTGTGGCGCGAGGTTTAGAGTACTTGCATAGAGGCTGCAACACAGGGATTGCGCATTTTGACATCAAACCACACAACATTCTGTTGGACAATGAGTTCTGCCCCAAGATATCAGACTTTGGGCTTGCCAAGCAATGTGCGAGAGAGAGTCACGTGTCCATGACAGGAGTGAAGGGGACAATTGGGTTCATGGCTCCTGAAATGATGTTTAGAAATCTTGGGAAGGTTTCTCACAAGTCTGATGTTTATAGCTATGGAATGTTGGTTCTTGAAATGGTGGGAGAAAGAAAGAATCCCAACCAAGGAGTGGGGGAGAGCACTGAAGAGTACTTTCCTGATTGGATATATAAGGATCTTGTACAAAGTACTCACAGAATCGGAGGTTGTAGATCTCAGGTTAAAGAAGAAGAAGAAATGGTTAGAAAAATGATAATTGTGGGGTTGTGTTGCATCCAAACATTGCCGGAGGAGAGGCCGGCGATGAGCGAAGTGGTGGAGATGTTGGAAGGCAGTGTTGATGGCTTGCAGATTCCACCCAAACCAACATTGTTTGGACATCCTGAGCTGCCCCAACCTTCTTCTTCATCCATCTCACTCAAACTATAA 1074 43.58 MVGERKSPNERVRKSSEEYFPDWIYTNLSGTVNRWRPSMGQYRGGRRDDSFRHKLGQRGFSTVYKGTIPDGCEVAVKLLKESKEDGEAFMNEVVCITRTSHVNIVAILGFCYEPNKRALVYEYMPKGSLDKYMFHGELQKNNDVKLDWNMLYNIVIGVARGLEYLHRGCNTGIAHFDIKPHNILLDNEFCPKISDFGLAKQCARESHVSMTGVKGTIGFMAPEMMFRNLGKVSHKSDVYSYGMLVLEMVGERKNPNQGVGESTEEYFPDWIYKDLVQSTHRIGGCRSQVKEEEEMVRKMIIVGLCCIQTLPEERPAMSEVVEMLEGSVDGLQIPPKPTLFGHPELPQPSSSSISLKL 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 35805552 35809054 - Sed0023959.1 Sed08g2192 723968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2192 357 Gene3D Transferase(Phosphotransferase) domain 1 124 332 - -
Sed08g2192 357 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g2192 357 SMART serkin_6 49 324 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g2192 357 FunFam PR5-like receptor kinase 124 336 - -
Sed08g2192 357 ProSiteProfiles Protein kinase domain profile. 49 345 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g2192 357 SUPERFAMILY Protein kinase-like (PK-like) 39 325 IPR011009 -
Sed08g2192 357 Pfam Protein tyrosine and serine/threonine kinase 51 324 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g2192 357 PANTHER RUST RESISTANCE KINASE LR10-RELATED 49 343 IPR045874 GO:0004672(InterPro)
Sed08g2192 357 Gene3D Phosphorylase Kinase; domain 1 46 123 - -
Sed08g2192 357 MobiDBLite consensus disorder prediction 335 357 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2192 Sed-Chr8:35805552 Sed08g2195 Sed-Chr8:35822251 3.70E-166 dispersed
Sed08g2192 Sed-Chr8:35805552 Sed08g2193 Sed-Chr8:35809110 5.30E-48 tandem
Sed01g1731 Sed-Chr1:12608740 Sed08g2192 Sed-Chr8:35805552 1.90E-100 wgd
Sed01g2180 Sed-Chr1:16437352 Sed08g2192 Sed-Chr8:35805552 1.60E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79672 PF07714 PK_Tyr_Ser-Thr 4.20E-46 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2192 - - - 0.0