Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2194 ATGCCATTTCAAAATTTGACTGCTATAGCTGATGCATATTGCATGCTAAGTGCAGTTGTTCTAATTCCTCCAATGTTGTTAAATGAACTTGGTGGTTTGCAAGAGGCAGCACAGCATTTTATAGCAGTATTTGAATCTGATTCTCAGATTGACCTTCAAGCATGTAGAAGCTGCAGTGTTTCCGGTGGTATTTGTGGTTATGAAGACTCTATTAAATTTAATCCCTTGTTTTTAAATCAGCCAAAATGCTTCTGCCAATCTTCCTCTTATGGGTTTCAAGTTTGTCCTTCCTCGGTGTCAATGGTTAAAAGACCAGAACCCTCTCCATCCAAGTCTGGAAAGTCGAGCTTGCAGAAGAAAGCATCTATCGTAGTTGCAATTGTTTTAGGAGGCATTATTATGATAATCTGCCTCATCATGTTCCTCCACTACATAAGAAAAAACAACTCGAATAATCACAAAATTGATGAAACCATATGGAGATATTCAACGCACACCCCTGAGCGATACAGTTACTCAAAGCTAAAGAAAATTACAAACTCTTTCAAGTACAGGCTTGGTCAAGGAGGTTTTAGCACGGTCTACAAAGGCAAGTTATCAGATGGTCGTGAAGTGGCTGTAAAACTCTTGAATAAATCCAGAGAGAACAGTCAAGATTTCATGAATGAAGTTGTGAATGTCACTAGAACCGCAAACGTAAACATAGCTGGTCTCTTGGGGTTTTGTTATGAGGGGGATAAAAGAGCTTTGATTTATGAGTACATGCCAAATGGGTCATTGGATAAATACATATTTCACAAAGAGCAGCAGAAGAATGAAATGGAGTTGGATTGGAAAATGCTCTACAACATAGTCATGGGCGTGGCTCGAGGCTTAGAGTACTTGCATCGTGACTGCCACACAAAGATTGTGCATTTTGACATAAAGCCACACAACATTCTCTTGGACAACAATTTTTGCCCCAAGATCTCAGACTTTGGGCTGGCCAAGCAGTATAGGGCAAAGGAGAGTCACGTGTCGATGACCGGTGTGAAAGGGACAGCAGGGTTTATGGCTCCTGAAATAATGTTTAGAAGCATTGGCAAGGTTTCTCACAAGTCTGATGTTTATAGTTTTGGAATGTTGGTTCTTGAGATAGTGGGTGAAAGAAAGAGTCCTAATGATGATGAAGGGAGCAAAGAACAATATTTTCCTGATTGGATATATGAGGATCTGAGAAAGAGTGAAGAGCAGTGGTGGGGAGGAACAGAGGAAGAAGAAGTGATGGCAAGAAAAATGACAATAGTGGGGTTGTGTTGCATCCAGACGTCGCCGGACGAGAGGCCGCCAATGAGTGAAGTGGTGGCAATGTTGGAAGCTAGTGTGGATGGCTTACAGATACCACCCAAGCCTACCTTATTTAGACCTTCTGCTGTTACTCTCTACTCTCTTCCTTCTACTTCTTCATCAGCCTCATATTGA 1461 41.41 MPFQNLTAIADAYCMLSAVVLIPPMLLNELGGLQEAAQHFIAVFESDSQIDLQACRSCSVSGGICGYEDSIKFNPLFLNQPKCFCQSSSYGFQVCPSSVSMVKRPEPSPSKSGKSSLQKKASIVVAIVLGGIIMIICLIMFLHYIRKNNSNNHKIDETIWRYSTHTPERYSYSKLKKITNSFKYRLGQGGFSTVYKGKLSDGREVAVKLLNKSRENSQDFMNEVVNVTRTANVNIAGLLGFCYEGDKRALIYEYMPNGSLDKYIFHKEQQKNEMELDWKMLYNIVMGVARGLEYLHRDCHTKIVHFDIKPHNILLDNNFCPKISDFGLAKQYRAKESHVSMTGVKGTAGFMAPEIMFRSIGKVSHKSDVYSFGMLVLEIVGERKSPNDDEGSKEQYFPDWIYEDLRKSEEQWWGGTEEEEVMARKMTIVGLCCIQTSPDERPPMSEVVAMLEASVDGLQIPPKPTLFRPSAVTLYSLPSTSSSASY 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 35817910 35820052 + Sed0013736.1 Sed08g2194 723970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2194 486 ProSiteProfiles Protein kinase domain profile. 180 455 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g2194 486 PANTHER RUST RESISTANCE KINASE LR10-RELATED 114 470 IPR045874 GO:0004672(InterPro)
Sed08g2194 486 SMART serkin_6 180 451 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g2194 486 Gene3D Transferase(Phosphotransferase) domain 1 255 459 - -
Sed08g2194 486 FunFam PR5-like receptor kinase 255 463 - -
Sed08g2194 486 Gene3D Phosphorylase Kinase; domain 1 143 254 - -
Sed08g2194 486 ProSitePatterns Serine/Threonine protein kinases active-site signature. 303 315 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g2194 486 ProSitePatterns Protein kinases ATP-binding region signature. 186 208 IPR017441 GO:0005524(InterPro)
Sed08g2194 486 SUPERFAMILY Protein kinase-like (PK-like) 168 481 IPR011009 -
Sed08g2194 486 Pfam Protein tyrosine and serine/threonine kinase 183 451 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2194 Sed-Chr8:35817910 Sed13g2083 Sed-Chr13:25587785 7.70E-66 dispersed
Sed08g2193 Sed-Chr8:35809110 Sed08g2194 Sed-Chr8:35817910 3.40E-55 tandem
Sed08g2194 Sed-Chr8:35817910 Sed08g2195 Sed-Chr8:35822251 5.60E-133 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79674 PF07714 PK_Tyr_Ser-Thr 3.10E-47 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2194 - - - 0.0