Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2195 ATGAAAATGAAGAGTAGTATGTTGGTGTGGTTGTTGTTGGTAGGTTTTGAATCTTGGGGATGCCGTTTGATCGAAAGCAACGAATTTAAAGCTTGCGATGTGAGTTACAACTGCGGAGAATTGGTAGACATCACGTATCCATTCTGGGGAAATGAGAGGCCCCAATTCTGCGGGAAGGAAGAATTCAAACTGAGTTGCATACACAACAAAATCACCACTATGGAAATCGATTCTGTGGCGCATCACGTTCTGAAAATCAACCAGTCGAAAAACAGCATGAGGATCGCAAGAGCAGACCTCAATGATAATATCTGCCCCAAAACTCAACTAAAACGACACATTCAGTATTACCCTTTGTTCAAGAATGATATGTCTACACCATTTACAAATGATGAAGTATCCCTGTGGTACAGTTGCTTGAGGAAAAATGCATCGTTTGACAGGTACATATTTTGGTGCGGGTGGGGAGGGGAAAACCAGGGGAAGACAGCCAATTACTTTTCATATTCGGGTTTAACACCCTGTGAAGGAGATGGGTGCCAAATGAATGTGAATGTGAATGTGATGCTTTCGAGCTTGGAACCTCGAAACAACACGAAGGCTGCCTTGGAGGAAGGCGTGAGACAAGGGTTCGAGGTGGAATACGATGAGTGGCATAACGTAGCGTGCAACGGATGCAACGAATCCGGCGGTAAATGTGGTGCAAACTCCACTTACCCATTTTACTGCATTTGTGCAGATGGAGATGCACATCCCTATCTCTGCCTAAAAACGCATTACACCTCCAAATTCATCAAAGCCACAATTCCGACAGCATCCGTCATTTTCATGGTTTCAATCTTCATCTTCATCTACTGCACGTGGAAACAAACCTCAAACAAAGATGAAATTGAAGATATCATTAAGAGATACTCTACACTAACACCCAAGCGATACACTTACTCAAAGCTAAAGAAAATAACAGATTCCTTCCGCCACAAGCTCGGCCAAGGAGGGTTTAGCACGGTCTACAAAGGAACCTTACCAGACGGCTGCGAAGTGGCAGTGAAACTTTTGAAAGAATCCAAAGAGGACGGGGAAGCTTTTATGAATGAAGTTGTTAGTATCACGAGAACTTCCCATGTCAATATAGTCGCTATCTTGGGTTTCTGCTACGAACCTAACAACAGAGCTTTAGTTTACGAGTATATGCCCAGAGGTTCATTGGATAAATACATGTTCCATGGAGAATTACAACAAAACAATGATGTGAAGTTGGACTGGAACATGTTGAATAACATTGTAATGGGTGTGGCGCGAGGTTTAGAGTACTTGCATCGAGGCTGCAACACAAGGATTGTGCATTTTGACATCAAACCACACAACATTCTGTTGGACAATGAGTTCTGCCCCAAGATATCGGACTTTGGGCTTGCCAAGCAATGTGCGAGAGAGAGTTACGTGTCCATGACAGGAGTGAAAGGGACGATTGGGTTCATGGCTCCTGAAATGATGTTTAGAAATCTTGGGAAGGTTTCTCACAAGTCTGATGTTTATAGCTATGGAATGTTGGTTCTTGAAATGGTTGGAGAAAGAAAGAATCCCAACCAAGGAGCGGGGGAGAGCACTGACGAGTTCTTTCCTGATTGGATATATAAAGATCTTGTACAAAGTACTGATGGAGTTGGAGGTTGTATCTGGAGGAACACCAAGATTGAAAAAGAAGAAGAAATGGTTAGAAAAATGATAATTGTGGGGTTGTGTTGCATCCAAACATTGCCGGAGGAGAGGCCGGCAATGAGCGAAGTGGTGGCGATGTTAGAAGGCAGTGTTGATGGCTTACAGATTCCACCCAAACCGACATTGTTTGGACCTCCTGAGCTGCCCCAACCTTCTTCTTCATCCATCTCACTGTCCTCAATCCATTCACAAACTCAACAAAATGAAAAGACTAAAATGTAG 1941 43.38 MKMKSSMLVWLLLVGFESWGCRLIESNEFKACDVSYNCGELVDITYPFWGNERPQFCGKEEFKLSCIHNKITTMEIDSVAHHVLKINQSKNSMRIARADLNDNICPKTQLKRHIQYYPLFKNDMSTPFTNDEVSLWYSCLRKNASFDRYIFWCGWGGENQGKTANYFSYSGLTPCEGDGCQMNVNVNVMLSSLEPRNNTKAALEEGVRQGFEVEYDEWHNVACNGCNESGGKCGANSTYPFYCICADGDAHPYLCLKTHYTSKFIKATIPTASVIFMVSIFIFIYCTWKQTSNKDEIEDIIKRYSTLTPKRYTYSKLKKITDSFRHKLGQGGFSTVYKGTLPDGCEVAVKLLKESKEDGEAFMNEVVSITRTSHVNIVAILGFCYEPNNRALVYEYMPRGSLDKYMFHGELQQNNDVKLDWNMLNNIVMGVARGLEYLHRGCNTRIVHFDIKPHNILLDNEFCPKISDFGLAKQCARESYVSMTGVKGTIGFMAPEMMFRNLGKVSHKSDVYSYGMLVLEMVGERKNPNQGAGESTDEFFPDWIYKDLVQSTDGVGGCIWRNTKIEKEEEMVRKMIIVGLCCIQTLPEERPAMSEVVAMLEGSVDGLQIPPKPTLFGPPELPQPSSSSISLSSIHSQTQQNEKTKM 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 35822251 35824774 + Sed0006557.1 Sed08g2195 723971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2195 646 Pfam Wall-associated receptor kinase C-terminal 178 248 IPR032872 -
Sed08g2195 646 Gene3D Phosphorylase Kinase; domain 1 294 396 - -
Sed08g2195 646 SMART serkin_6 322 600 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g2195 646 FunFam PR5-like receptor kinase 397 612 - -
Sed08g2195 646 Gene3D Transferase(Phosphotransferase) domain 1 397 608 - -
Sed08g2195 646 ProSitePatterns Serine/Threonine protein kinases active-site signature. 446 458 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g2195 646 Pfam Protein tyrosine and serine/threonine kinase 324 600 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g2195 646 ProSiteProfiles Protein kinase domain profile. 322 615 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g2195 646 MobiDBLite consensus disorder prediction 609 646 - -
Sed08g2195 646 SUPERFAMILY Protein kinase-like (PK-like) 301 601 IPR011009 -
Sed08g2195 646 MobiDBLite consensus disorder prediction 621 646 - -
Sed08g2195 646 FunFam serine/threonine-protein kinase PBS1-like 289 396 - -
Sed08g2195 646 ProSitePatterns Protein kinases ATP-binding region signature. 328 350 IPR017441 GO:0005524(InterPro)
Sed08g2195 646 Pfam Wall-associated receptor kinase galacturonan-binding 34 97 IPR025287 GO:0030247(InterPro)
Sed08g2195 646 PANTHER RUST RESISTANCE KINASE LR10-RELATED 257 619 IPR045874 GO:0004672(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1732 Sed-Chr1:12616575 Sed08g2195 Sed-Chr8:35822251 5.90E-191 dispersed
Sed01g1733 Sed-Chr1:12626684 Sed08g2195 Sed-Chr8:35822251 7.80E-191 dispersed
Sed08g2192 Sed-Chr8:35805552 Sed08g2195 Sed-Chr8:35822251 3.70E-166 dispersed
Sed08g2193 Sed-Chr8:35809110 Sed08g2195 Sed-Chr8:35822251 3.00E-59 dispersed
Sed08g2195 Sed-Chr8:35822251 Sed13g2083 Sed-Chr13:25587785 6.00E-66 dispersed
Sed08g2194 Sed-Chr8:35817910 Sed08g2195 Sed-Chr8:35822251 5.60E-133 tandem
Sed01g1734 Sed-Chr1:12630512 Sed08g2195 Sed-Chr8:35822251 4.20E-83 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79675 PF07714 PK_Tyr_Ser-Thr 3.30E-48 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2195 - - - 0.0