Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed08g2207 | ATGGATGACACATTCAACAATAACCACCAATTCTATTCGGGTGATCTATTATTAGAAGATATGGACGAAAAATCCCCTCATACCCTTCTCACCGCCACCGCCACCGCCAAGAAGGGCAGAAGAGGGATGAAGAAAAAAGTGGTGTCGGTGAGAATTCATGGCGACACCCCAAGGAATTCTTCTGCCTCTGCAGCTCCTCCTTCTGATTCTTGGGCTTGGAGAAAATACGGTCAAAAACCAATTAAAGGTTCTCCTTATCCAAGGGCGTATTATAGGTGTAGTAGTTCCAAAGGATGTCCGGCTAGGAAGCAAGTAGAGAGGAACCGGCTCGATCCAACGATGTTGGTGATTACATACTCATGCGAGCACAATCATTCCGGTCCGGTTTCAAGAAACAACAATACTCACCACAAAGCCGCCGTGGAGAAACCCGGTTCGCCGGAGCCGGTTCAGCCGGAAGTGGATGAGAAATTTGTGGAAATTGGAGAGGAAATATCGTTGATTGCGAGGGACGAGTTCAGTTGGTTCGGGGAAATGGAAACGACGTCGTCCACTGTACTCGAAAGCTCAATTTTCTCGGGCAGGTCCAGTGGATTGGGAGATTTGATTTCCAATGACGTGGCAATGCTTTTGCCGATGAGGAGCGATGACGTGGACGAATCACTATTTGCGGATCTCGGCGAGTTGCCGGAGTGCTCGGTGGTTTTCCGGCCCGGCGGTGGCCGGGGATTGACGGCGGAGGAACAACCGCCGCCGGCGCAGCGGCGGATCACTCCTTGGTGCGAAACTACCACGTGA | 798 | 51.38 | MDDTFNNNHQFYSGDLLLEDMDEKSPHTLLTATATAKKGRRGMKKKVVSVRIHGDTPRNSSASAAPPSDSWAWRKYGQKPIKGSPYPRAYYRCSSSKGCPARKQVERNRLDPTMLVITYSCEHNHSGPVSRNNNTHHKAAVEKPGSPEPVQPEVDEKFVEIGEEISLIARDEFSWFGEMETTSSTVLESSIFSGRSSGLGDLISNDVAMLLPMRSDDVDESLFADLGELPECSVVFRPGGGRGLTAEEQPPPAQRRITPWCETTT | 265 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 35866387 | 35868137 | - | Sed0018885.1 | Sed08g2207 | 723983 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed08g2207 | 265 | ProSiteProfiles | WRKY domain profile. | 62 | 128 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed08g2207 | 265 | MobiDBLite | consensus disorder prediction | 126 | 151 | - | - | |
Sed08g2207 | 265 | Gene3D | WRKY domain | 54 | 129 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed08g2207 | 265 | MobiDBLite | consensus disorder prediction | 240 | 265 | - | - | |
Sed08g2207 | 265 | MobiDBLite | consensus disorder prediction | 136 | 151 | - | - | |
Sed08g2207 | 265 | PANTHER | WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED | 28 | 233 | IPR044810 | GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Sed08g2207 | 265 | SUPERFAMILY | WRKY DNA-binding domain | 64 | 127 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed08g2207 | 265 | SMART | WRKY_cls | 67 | 127 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed08g2207 | 265 | Pfam | WRKY DNA -binding domain | 69 | 125 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed08g2207 | 265 | FunFam | WRKY transcription factor 65 | 51 | 128 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed08g2207 | Sed-Chr8:35866387 | Sed10g0042 | Sed-Chr10:271357 | 3.10E-29 | dispersed | |
Sed01g2171 | Sed-Chr1:16361670 | Sed08g2207 | Sed-Chr8:35866387 | 2.40E-98 | wgd | |
Sed14g1557 | Sed-Chr14:23766438 | Sed08g2207 | Sed-Chr8:35866387 | 4.10E-13 | wgd | |
Sed04g3382 | Sed-Chr4:43815880 | Sed08g2207 | Sed-Chr8:35866387 | 3.50E-42 | wgd | |
Sed05g1905 | Sed-Chr5:32418315 | Sed08g2207 | Sed-Chr8:35866387 | 6.10E-41 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39425 | PF03106 | WRKY | 5.40E-25 | CL0274 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed08g2207 | - | - | - | 0.0 |