Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2207 ATGGATGACACATTCAACAATAACCACCAATTCTATTCGGGTGATCTATTATTAGAAGATATGGACGAAAAATCCCCTCATACCCTTCTCACCGCCACCGCCACCGCCAAGAAGGGCAGAAGAGGGATGAAGAAAAAAGTGGTGTCGGTGAGAATTCATGGCGACACCCCAAGGAATTCTTCTGCCTCTGCAGCTCCTCCTTCTGATTCTTGGGCTTGGAGAAAATACGGTCAAAAACCAATTAAAGGTTCTCCTTATCCAAGGGCGTATTATAGGTGTAGTAGTTCCAAAGGATGTCCGGCTAGGAAGCAAGTAGAGAGGAACCGGCTCGATCCAACGATGTTGGTGATTACATACTCATGCGAGCACAATCATTCCGGTCCGGTTTCAAGAAACAACAATACTCACCACAAAGCCGCCGTGGAGAAACCCGGTTCGCCGGAGCCGGTTCAGCCGGAAGTGGATGAGAAATTTGTGGAAATTGGAGAGGAAATATCGTTGATTGCGAGGGACGAGTTCAGTTGGTTCGGGGAAATGGAAACGACGTCGTCCACTGTACTCGAAAGCTCAATTTTCTCGGGCAGGTCCAGTGGATTGGGAGATTTGATTTCCAATGACGTGGCAATGCTTTTGCCGATGAGGAGCGATGACGTGGACGAATCACTATTTGCGGATCTCGGCGAGTTGCCGGAGTGCTCGGTGGTTTTCCGGCCCGGCGGTGGCCGGGGATTGACGGCGGAGGAACAACCGCCGCCGGCGCAGCGGCGGATCACTCCTTGGTGCGAAACTACCACGTGA 798 51.38 MDDTFNNNHQFYSGDLLLEDMDEKSPHTLLTATATAKKGRRGMKKKVVSVRIHGDTPRNSSASAAPPSDSWAWRKYGQKPIKGSPYPRAYYRCSSSKGCPARKQVERNRLDPTMLVITYSCEHNHSGPVSRNNNTHHKAAVEKPGSPEPVQPEVDEKFVEIGEEISLIARDEFSWFGEMETTSSTVLESSIFSGRSSGLGDLISNDVAMLLPMRSDDVDESLFADLGELPECSVVFRPGGGRGLTAEEQPPPAQRRITPWCETTT 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 35866387 35868137 - Sed0018885.1 Sed08g2207 723983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2207 265 ProSiteProfiles WRKY domain profile. 62 128 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed08g2207 265 MobiDBLite consensus disorder prediction 126 151 - -
Sed08g2207 265 Gene3D WRKY domain 54 129 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed08g2207 265 MobiDBLite consensus disorder prediction 240 265 - -
Sed08g2207 265 MobiDBLite consensus disorder prediction 136 151 - -
Sed08g2207 265 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 28 233 IPR044810 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Sed08g2207 265 SUPERFAMILY WRKY DNA-binding domain 64 127 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed08g2207 265 SMART WRKY_cls 67 127 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed08g2207 265 Pfam WRKY DNA -binding domain 69 125 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed08g2207 265 FunFam WRKY transcription factor 65 51 128 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2207 Sed-Chr8:35866387 Sed10g0042 Sed-Chr10:271357 3.10E-29 dispersed
Sed01g2171 Sed-Chr1:16361670 Sed08g2207 Sed-Chr8:35866387 2.40E-98 wgd
Sed14g1557 Sed-Chr14:23766438 Sed08g2207 Sed-Chr8:35866387 4.10E-13 wgd
Sed04g3382 Sed-Chr4:43815880 Sed08g2207 Sed-Chr8:35866387 3.50E-42 wgd
Sed05g1905 Sed-Chr5:32418315 Sed08g2207 Sed-Chr8:35866387 6.10E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39425 PF03106 WRKY 5.40E-25 CL0274 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2207 - - - 0.0