Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2211 ATGATGGTTTCTGATGTTCCCATTTGCCACACTTGTGGTGAGCAAGTTGGTGTTGATGCCAATGGTGAGGTTTTTGTTGCTTGCCATGAGTGCCATTTTCCTATCTGCAAGGTCTGCGTTCAGTATGATGTTAAGGAAGGCCGAAATGTCTGCTTGCGGTGTGGCTCTCCTTTTGACGAGAAATTACTGATTGATGATACAAAGGCATCACGAGATCGAAACACCGTGGCATCTCATCTCAGTCATTCTCAGGACGTTGGAGTTCATGCTAGACATGTCAGTAGCGTGTCGACAGTGGATAGTGAATTGAATGATGAATCTGGGAACCCAATATGGAAGAACAGAGTAGAGAGTTGGAAGGATAAGAAGAACAAAAAGAAAAGAGCTACCGTGAAGACAGATGAAGAAGCTCAAATTCCACCCCAACAACAAATGGAAGAGAAACAGATTTCAGAGGATGCTGCAGTTACACACTCATTTTCTTCAGTTTATCCGATTGCGTCGAGCAGATTAACACCATACAGAATAGTGATAATCATGCGATTGATCATTTTGGCTCTTTTCTTTCAATATCGGATTACAAATCCTGTTAATAGTGCTTTTGGTCTATGGCTCACTTCTATCATATGTGAAATCTGGTTTGCCTTCTCCTGGGTGTTGGATCAGTTCCCTAAATGGTCTCCCGTCTGCAGGGACACATTCATTGACAGATTATCCGCCAGATTTGAAAGAGAGGGAGAACCATCCCAGCTTGCTGCTGTGGATTTTTTTGTGAGTACCGTTGATCCATTGAAAGAGCCTCCACTAATCACTGCCAATACCGTGCTTTCAATCCTTGCTGTGGACTATCCTGTTGATAAAGTCTCCTGCTATGTGTCTGACGATGGTGCAGCTATGCTTTCATTTGAATCTCTAGTTGAAACAGCCGACTTTGCAAGGAAGTGGGTTCCATTCTGCAAGAAATTCGCCATTGAACCCCGTGCTCCTGAGTTTTACTTCTCACAGAAAATAGACTATTTGAAAGATAAAGTGCAACCTTCTTTTGTCAAGGAACGTAGAGCAATGAAAAGAGCTTATGAAGAGTTTAAAGTACGAGTCAATGCTTTGGTAGCAAAGGCTCAAAAAACACCAGATGAAGGCTGGTCCATGCAAGATGGAACAGCTTGGCCAGGAAACAATCCACGTGACCACCCTGGAATGATTCAGGTTTTTCTTGGAAATACTGGCGCCCATGACATGGATGGTAATGAACTTCCTCGACTTGTCTATGTCTCCAGAGAGAAAAGGCCTGGTTACCAGCATCACAAAAAAGCTGGTGCTGAAAATGCTCTGGTAAGAGTATCAGCAGTCCTCACAAATGCCCCCTTCATTCTCAACCTTGACTGTGATCACTATCTTAACAATAGCCAAGCTATACGTGAGGCAATGTGTTTCTTGATGGACCCACAAGTAGGCCGAGATGTATGCTATGTCCAATTTCCTCAGAGGTTTGATGGCATTGATCGAAGTGATCGATATGCCAATCGCAACACAGTTTTCTTTGATGTGAACATGAAAGGATTGGATGGTATCCAGGGACCAGTTTATGTTGGTACAGGTTGCGTTTTCAATCGACAGGCACTTTATGGCTATGGACCTCCTTCTATGCCTAGCTTATCTAAGACATCCTCATCTTGCTCTTGGTGTGGCTGCTGTTCGTGCTGCTGTCCTTCCAAGAAGATCTCGAAAGATCCGACTGAGATTCAGAGAGATGCAAAAAGAGAAGAGCTTGATGCTGCAATCTTTAACCTCAGGGAAATAGATAATTACGACGAGTACGAAAGGTCAATGCTGATATCTCAATTGAGCTTTGAGAAGACCTTTGGCTTATCTTCTGTATTTATTGAGTCCACACTAATGGAAAATGGAGGAGTTGCAGAATCTATAAATCCATCGACTTTGATCAAAGAAGCGATTCATGTCATTGGTTGTGGTTATGAAGAGAAAACTGCCTGGGGAAAAGAGATTGGTTGGATATATGGTTCAGTCACTGAGGATATCTTAACGGGTTTTAAGATGCATTGCCGAGGATGGAGGTCCATCTACTGCATGCCCTTGAGGCCAGCATTCAAAGGATCAGCACCAATTAACCTTTCTGATCGTCTGCACCAAGTTCTTCGATGGGCACTTGGATCTGTTGAGATTTTTCTCAGCAGACATTGTCCATTATGGTATGGATTCGCAGGCGGTCGGCTCAAATGGCTCCAAAGAATGGCATATATAAACACCATTGTCTACCCATTCACCTCTCTCCCTCTTGTTGCTTACTGCACATTGCCTGCAATCTGCTTGCTGACGGGAAAGTTTATCATTCCAACGCTCTCAAATCTAGCGAGTACCCTTTTTCTCGGTCTCTTCTTGTCCATCATTCTCACAAGTGTCCTTGAGCTACGTTGGAGTGGTGTTAGCATCGAAGATCTATGGCGTAACGAGCAATTCTGGGTCATAGGAGGCGTCTCAGCTCATCTATTTGCTGTCTTCCAAGGGTTCCTAAAGATGTTAGCTGGTGTTGACACCAACTTCACAGTTACCGCAAAGGCAGCAGAGGACGGCGAGTTTGGAGAGCTTTACATGGTGAAATGGACAACACTTTTGATCCCTCCTACGACCCTTATCGTCGTCAACATGGTCGGTGTCGTTGCTGGTTTTTCCGATGCATTAAATGGTGGGTATGAAGCTTGGGGACCTCTTTTTGGCAAGGTATTCTTTGCCTTTTGGGTGATTTTTCATCTCTATCCATTCCTCAAAGGTCTCATGGGTCGCCAAAACCGGACTCCAACCATTGTTGTTCTGTGGTCAGTGTTGCTGGCATCAGTTTTCTCACTTGTATGGGTGAAGATTGACCCATTTGTGAACCAGGTTGACACTTCTGCACTTGCTCAAAGCTGCACTGCCATAGATTGTTGA 2946 44.16 MMVSDVPICHTCGEQVGVDANGEVFVACHECHFPICKVCVQYDVKEGRNVCLRCGSPFDEKLLIDDTKASRDRNTVASHLSHSQDVGVHARHVSSVSTVDSELNDESGNPIWKNRVESWKDKKNKKKRATVKTDEEAQIPPQQQMEEKQISEDAAVTHSFSSVYPIASSRLTPYRIVIIMRLIILALFFQYRITNPVNSAFGLWLTSIICEIWFAFSWVLDQFPKWSPVCRDTFIDRLSARFEREGEPSQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLSFESLVETADFARKWVPFCKKFAIEPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKRAYEEFKVRVNALVAKAQKTPDEGWSMQDGTAWPGNNPRDHPGMIQVFLGNTGAHDMDGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPFILNLDCDHYLNNSQAIREAMCFLMDPQVGRDVCYVQFPQRFDGIDRSDRYANRNTVFFDVNMKGLDGIQGPVYVGTGCVFNRQALYGYGPPSMPSLSKTSSSCSWCGCCSCCCPSKKISKDPTEIQRDAKREELDAAIFNLREIDNYDEYERSMLISQLSFEKTFGLSSVFIESTLMENGGVAESINPSTLIKEAIHVIGCGYEEKTAWGKEIGWIYGSVTEDILTGFKMHCRGWRSIYCMPLRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGFAGGRLKWLQRMAYINTIVYPFTSLPLVAYCTLPAICLLTGKFIIPTLSNLASTLFLGLFLSIILTSVLELRWSGVSIEDLWRNEQFWVIGGVSAHLFAVFQGFLKMLAGVDTNFTVTAKAAEDGEFGELYMVKWTTLLIPPTTLIVVNMVGVVAGFSDALNGGYEAWGPLFGKVFFAFWVIFHLYPFLKGLMGRQNRTPTIVVLWSVLLASVFSLVWVKIDPFVNQVDTSALAQSCTAIDC 981
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 35890291 35897098 + Sed0002067.1 Sed08g2211 723987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2211 981 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 81 IPR013083 -
Sed08g2211 981 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 173 948 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Sed08g2211 981 MobiDBLite consensus disorder prediction 123 146 - -
Sed08g2211 981 FunFam Cellulose synthase 371 545 - -
Sed08g2211 981 Pfam Zinc-binding RING-finger 7 59 IPR027934 -
Sed08g2211 981 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 550 579 IPR017896 -
Sed08g2211 981 SUPERFAMILY Nucleotide-diphospho-sugar transferases 268 764 IPR029044 -
Sed08g2211 981 SUPERFAMILY RING/U-box 3 63 - -
Sed08g2211 981 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 407 548 IPR029044 -
Sed08g2211 981 Pfam Cellulose synthase 254 971 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2211 Sed-Chr8:35890291 Sed11g1757 Sed-Chr11:32617670 0.00E+00 dispersed
Sed08g2211 Sed-Chr8:35890291 Sed12g2280 Sed-Chr12:33014775 0.00E+00 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2211 K10999 - csv:101208988 1878.6