Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed08g2211 | ATGATGGTTTCTGATGTTCCCATTTGCCACACTTGTGGTGAGCAAGTTGGTGTTGATGCCAATGGTGAGGTTTTTGTTGCTTGCCATGAGTGCCATTTTCCTATCTGCAAGGTCTGCGTTCAGTATGATGTTAAGGAAGGCCGAAATGTCTGCTTGCGGTGTGGCTCTCCTTTTGACGAGAAATTACTGATTGATGATACAAAGGCATCACGAGATCGAAACACCGTGGCATCTCATCTCAGTCATTCTCAGGACGTTGGAGTTCATGCTAGACATGTCAGTAGCGTGTCGACAGTGGATAGTGAATTGAATGATGAATCTGGGAACCCAATATGGAAGAACAGAGTAGAGAGTTGGAAGGATAAGAAGAACAAAAAGAAAAGAGCTACCGTGAAGACAGATGAAGAAGCTCAAATTCCACCCCAACAACAAATGGAAGAGAAACAGATTTCAGAGGATGCTGCAGTTACACACTCATTTTCTTCAGTTTATCCGATTGCGTCGAGCAGATTAACACCATACAGAATAGTGATAATCATGCGATTGATCATTTTGGCTCTTTTCTTTCAATATCGGATTACAAATCCTGTTAATAGTGCTTTTGGTCTATGGCTCACTTCTATCATATGTGAAATCTGGTTTGCCTTCTCCTGGGTGTTGGATCAGTTCCCTAAATGGTCTCCCGTCTGCAGGGACACATTCATTGACAGATTATCCGCCAGATTTGAAAGAGAGGGAGAACCATCCCAGCTTGCTGCTGTGGATTTTTTTGTGAGTACCGTTGATCCATTGAAAGAGCCTCCACTAATCACTGCCAATACCGTGCTTTCAATCCTTGCTGTGGACTATCCTGTTGATAAAGTCTCCTGCTATGTGTCTGACGATGGTGCAGCTATGCTTTCATTTGAATCTCTAGTTGAAACAGCCGACTTTGCAAGGAAGTGGGTTCCATTCTGCAAGAAATTCGCCATTGAACCCCGTGCTCCTGAGTTTTACTTCTCACAGAAAATAGACTATTTGAAAGATAAAGTGCAACCTTCTTTTGTCAAGGAACGTAGAGCAATGAAAAGAGCTTATGAAGAGTTTAAAGTACGAGTCAATGCTTTGGTAGCAAAGGCTCAAAAAACACCAGATGAAGGCTGGTCCATGCAAGATGGAACAGCTTGGCCAGGAAACAATCCACGTGACCACCCTGGAATGATTCAGGTTTTTCTTGGAAATACTGGCGCCCATGACATGGATGGTAATGAACTTCCTCGACTTGTCTATGTCTCCAGAGAGAAAAGGCCTGGTTACCAGCATCACAAAAAAGCTGGTGCTGAAAATGCTCTGGTAAGAGTATCAGCAGTCCTCACAAATGCCCCCTTCATTCTCAACCTTGACTGTGATCACTATCTTAACAATAGCCAAGCTATACGTGAGGCAATGTGTTTCTTGATGGACCCACAAGTAGGCCGAGATGTATGCTATGTCCAATTTCCTCAGAGGTTTGATGGCATTGATCGAAGTGATCGATATGCCAATCGCAACACAGTTTTCTTTGATGTGAACATGAAAGGATTGGATGGTATCCAGGGACCAGTTTATGTTGGTACAGGTTGCGTTTTCAATCGACAGGCACTTTATGGCTATGGACCTCCTTCTATGCCTAGCTTATCTAAGACATCCTCATCTTGCTCTTGGTGTGGCTGCTGTTCGTGCTGCTGTCCTTCCAAGAAGATCTCGAAAGATCCGACTGAGATTCAGAGAGATGCAAAAAGAGAAGAGCTTGATGCTGCAATCTTTAACCTCAGGGAAATAGATAATTACGACGAGTACGAAAGGTCAATGCTGATATCTCAATTGAGCTTTGAGAAGACCTTTGGCTTATCTTCTGTATTTATTGAGTCCACACTAATGGAAAATGGAGGAGTTGCAGAATCTATAAATCCATCGACTTTGATCAAAGAAGCGATTCATGTCATTGGTTGTGGTTATGAAGAGAAAACTGCCTGGGGAAAAGAGATTGGTTGGATATATGGTTCAGTCACTGAGGATATCTTAACGGGTTTTAAGATGCATTGCCGAGGATGGAGGTCCATCTACTGCATGCCCTTGAGGCCAGCATTCAAAGGATCAGCACCAATTAACCTTTCTGATCGTCTGCACCAAGTTCTTCGATGGGCACTTGGATCTGTTGAGATTTTTCTCAGCAGACATTGTCCATTATGGTATGGATTCGCAGGCGGTCGGCTCAAATGGCTCCAAAGAATGGCATATATAAACACCATTGTCTACCCATTCACCTCTCTCCCTCTTGTTGCTTACTGCACATTGCCTGCAATCTGCTTGCTGACGGGAAAGTTTATCATTCCAACGCTCTCAAATCTAGCGAGTACCCTTTTTCTCGGTCTCTTCTTGTCCATCATTCTCACAAGTGTCCTTGAGCTACGTTGGAGTGGTGTTAGCATCGAAGATCTATGGCGTAACGAGCAATTCTGGGTCATAGGAGGCGTCTCAGCTCATCTATTTGCTGTCTTCCAAGGGTTCCTAAAGATGTTAGCTGGTGTTGACACCAACTTCACAGTTACCGCAAAGGCAGCAGAGGACGGCGAGTTTGGAGAGCTTTACATGGTGAAATGGACAACACTTTTGATCCCTCCTACGACCCTTATCGTCGTCAACATGGTCGGTGTCGTTGCTGGTTTTTCCGATGCATTAAATGGTGGGTATGAAGCTTGGGGACCTCTTTTTGGCAAGGTATTCTTTGCCTTTTGGGTGATTTTTCATCTCTATCCATTCCTCAAAGGTCTCATGGGTCGCCAAAACCGGACTCCAACCATTGTTGTTCTGTGGTCAGTGTTGCTGGCATCAGTTTTCTCACTTGTATGGGTGAAGATTGACCCATTTGTGAACCAGGTTGACACTTCTGCACTTGCTCAAAGCTGCACTGCCATAGATTGTTGA | 2946 | 44.16 | MMVSDVPICHTCGEQVGVDANGEVFVACHECHFPICKVCVQYDVKEGRNVCLRCGSPFDEKLLIDDTKASRDRNTVASHLSHSQDVGVHARHVSSVSTVDSELNDESGNPIWKNRVESWKDKKNKKKRATVKTDEEAQIPPQQQMEEKQISEDAAVTHSFSSVYPIASSRLTPYRIVIIMRLIILALFFQYRITNPVNSAFGLWLTSIICEIWFAFSWVLDQFPKWSPVCRDTFIDRLSARFEREGEPSQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLSFESLVETADFARKWVPFCKKFAIEPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKRAYEEFKVRVNALVAKAQKTPDEGWSMQDGTAWPGNNPRDHPGMIQVFLGNTGAHDMDGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPFILNLDCDHYLNNSQAIREAMCFLMDPQVGRDVCYVQFPQRFDGIDRSDRYANRNTVFFDVNMKGLDGIQGPVYVGTGCVFNRQALYGYGPPSMPSLSKTSSSCSWCGCCSCCCPSKKISKDPTEIQRDAKREELDAAIFNLREIDNYDEYERSMLISQLSFEKTFGLSSVFIESTLMENGGVAESINPSTLIKEAIHVIGCGYEEKTAWGKEIGWIYGSVTEDILTGFKMHCRGWRSIYCMPLRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGFAGGRLKWLQRMAYINTIVYPFTSLPLVAYCTLPAICLLTGKFIIPTLSNLASTLFLGLFLSIILTSVLELRWSGVSIEDLWRNEQFWVIGGVSAHLFAVFQGFLKMLAGVDTNFTVTAKAAEDGEFGELYMVKWTTLLIPPTTLIVVNMVGVVAGFSDALNGGYEAWGPLFGKVFFAFWVIFHLYPFLKGLMGRQNRTPTIVVLWSVLLASVFSLVWVKIDPFVNQVDTSALAQSCTAIDC | 981 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 35890291 | 35897098 | + | Sed0002067.1 | Sed08g2211 | 723987 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed08g2211 | 981 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 81 | IPR013083 | - | |
Sed08g2211 | 981 | PANTHER | X-BOX TRANSCRIPTION FACTOR-RELATED | 173 | 948 | - | GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER) | |
Sed08g2211 | 981 | MobiDBLite | consensus disorder prediction | 123 | 146 | - | - | |
Sed08g2211 | 981 | FunFam | Cellulose synthase | 371 | 545 | - | - | |
Sed08g2211 | 981 | Pfam | Zinc-binding RING-finger | 7 | 59 | IPR027934 | - | |
Sed08g2211 | 981 | ProSiteProfiles | 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. | 550 | 579 | IPR017896 | - | |
Sed08g2211 | 981 | SUPERFAMILY | Nucleotide-diphospho-sugar transferases | 268 | 764 | IPR029044 | - | |
Sed08g2211 | 981 | SUPERFAMILY | RING/U-box | 3 | 63 | - | - | |
Sed08g2211 | 981 | Gene3D | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 407 | 548 | IPR029044 | - | |
Sed08g2211 | 981 | Pfam | Cellulose synthase | 254 | 971 | IPR005150 | GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed08g2211 | Sed-Chr8:35890291 | Sed11g1757 | Sed-Chr11:32617670 | 0.00E+00 | dispersed | |
Sed08g2211 | Sed-Chr8:35890291 | Sed12g2280 | Sed-Chr12:33014775 | 0.00E+00 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed08g2211 | K10999 | - | csv:101208988 | 1878.6 |