Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2241 ATGCTTCTCCCAATCTTCCTCTTCATCTTCCTCATCATCCTCTCCAACCCATCTCTCCATTCCCTCTCCCTTTCCGACGAAGGCCTCTTTCTCCACTCAATCAAGCTCTCCCTCGACGATCCCGACGCCGCCCTCCGCTCATGGGACCTCCGCGACGCCACTCCCTGCGCCTGGTCCGGCGTCACCTGCAGCCCCACCACCACCTCCGTCGTCGCCGTCGACCTCTCCAACTCCAACATCGCCGGCCCTTTCCCATCCCTGATCTGCCGCCTTCGCAACCTCACCTCCCTTTCCCTCTCCAACAACTCCATCAACATGTCCCTTCCCTCTGCTATTTCCCTATGTTCTACCCTCCGCCACCTCGACCTCTCCCAAAATCTCCTCACCGGCGAGATTCCCTCTTCGATTTCCGATCTCCCCAACCTCCGATATCTCGATTTGACTGGGAATAACTTCTCCGGCGACATTCCCGCTAGTTTTGCTCTGTTTCCGAAGCTCGAGGTTCTGTCTCTGGTTTTTAATCTTCTCGACGGGCCGGTCCCGGCGTTTCTCGGCAACATTACGTCGTTGAAGATGTTGAACCTTTCTTACAACCCTTTTGCCCCGAGTAAAATCCCGGTTGAGTTTGGGAATTTGACGAATCTTGAGGTGCTCTGGTTGACGCAGTGTAATTTAATTGGGGAAATTCCGGGGTCTCTTGGTCGGTTGAAGCGGCTGACGGATTTGGATTTGGCGTTGAATAATCTTGATGGGTTGATTCCTGAATCGTTGATGGGGTTGAGTAGTGTGGTTCAGATTGAGTTGTATAATAACTCGTTGACAGGGAATTTGCCCTCTGGGTTTTCGAATTTGAGGTCGTTGAGACTGTTTGATGCGTCGATGAATGGTTTAACCGGGGAGATTCCGGATGAGTTGTGTCGGTTGCCTCTTGAGAGTCTGAATCTATATGAGAATAGATTTGAAGGGAAGTTGCCGGAAAGTATTGCGAACTCGCCGGCGTTGTACGAGCTCAGACTGTTTAGTAACCGTCTCACCGGCGAGTTACCACGGGATCTTGGGAAGAACTCGCCGTTGAGATGGATTGATGTTTCTGACAACCAGTTCTCTGGCGAACTCCCTGAGAGTTTATGTTCGAAGGGCGAGTTGGACGAGCTTCTAATGATTAACAACCAGTTTTCCGGGGAGATTCCGGCGAGTTTTGGTGAGTGTGTGAGCTTAACAAGGGTGAGATTGGGTAACAATCGGTTTTCCGGCGAGGTTCCGGCCGGTTTTTGGGGGCTCCCACACGTGTATCTCTTTGAACTAATTAGCAACTTTTTTTCGGGGGAAATTGCCGGCAACATTGCCACTGCGAAGAACCTTTCGATTTTCATCATCTCGAAGAACAACTTCACCGGCGCGATTCCGGCGGAGATTGGCCGATTGGAGAATCTTGTGAAAATTATAGCGACTGATAACAAACTCAACGGATCATTACCAGAGAGTCTTGTGAATCTAAGGCACCTTTCGAGTTTGGATCTTCGAAATAACGAAATCTCTGGAGAAATTCCTAACGGAATCAAATCCTGGAAGAATCTCAACGAACTTGATTTAGCAAACAATGAATTCTCTGGTGAAATCCCCGAAGAAATCGGTGCTTTGCGTGTTCTTAATTACCTTGATCTGTCTGGAAATTTGTTTTCTGGGAATATCCCAAATGGGTTACAGAATTTGAATCTCAATTTGCTAAATCTATCTTATAATCACTTGTCTGGCCAGCTTCCTCCGTTTTTAGCTAAAGGAAATCATGGAAATAGCTTTTTGGGGAACCCAGATTTGTGTGGACATTTGGAAAGACTGTGCAACAGCAAAGGTGAGGCGAACAGTGAAGGCTATCTCTGGTTGCTGCGTTTGATTTTCGCCGTTGCCGGTATCATGTTCCTCGTCGGCGTCGTCTGGTTTTACCTTAGATACAGGAAGTTCAAGATTGCAAAGAGAGAAATGGAGAAGGGAAAATGGACATTGATGTCCTTCCACAAGTTGGATTTCAGTGAATATGAGATCTTGGATTGTTTAGATGATGACAACATCATTGGCAGTGGAGCTTCTGGTAAAGTTTACAAGGTTGTGCTCAACAATGGGGAGGCTGTTGCAGTAAAGAAGCTGTTTGGTGGGATGAGGAAAGAGGGCGAAAAAGGCGGCGACGTCGAGAAGGGTCAAGTTCTAGACAACGGTTTTGAATCCGAAATCGATACGCTGGGAAAGATTAGGCACAAGAACATTGTGAAGTTGTGGTGCTGTTGTGTTACAAGAGACTACAAACTTTTGGTCTATGAATATATGCCTAATGGAAGCTTGGGGGATTTGATTCATAGTGGTAAAAAAGGATTGCTGAATTGGCCTACTAGGTTTAAGATAGCTCTGGATGTTGCAGAAGGGCTTTCTTATCTTCATCACGACTGCGTTCCTCCGATCGTACACCGAGATGTTAAGTCTAACAATATCTTGTTGGATGGTGACTTTGGAGCACGGTTGGCCGATTTCGGTGTAGCTAAGGTCTTCGATTCAACTCCAAAAGGGCCGCAATCCATGTCGGTCATTGCAGGATCTTGTGGCTACATCGCTCCAGAATACGCTTATACACTCCGAGTAAACGAAAAAAGCGACATATACAGTTTCGGTGTGGTAATCCTCGAGCTAATAACCGGGCGGCTACCAAACGATCCAGAGTTTGGGGAGAAGGACTTAGTGAAATGGGTGTGTTTCACATTGGATCAAGACGGGATCGATCAGGTCATCGACCCGAAACTCGAGAGTTGTTTCAAGGAAGAAATATGCAGAGTTGTGAACATTGGGCTCCTCTGCACCAGCCCTCTGCCCATCAACAGGCCATCCATGAGAAAAGTAGTGAAAATGCTGCAAGAAGTTGGAGCAGAAAACCAATTCAAAACCAACAACAAAGATGGAAAGTTAACTCCTTACTATTATGAAAATGGTTCAGATCAGGGAAGTGTAGCATAG 3000 47.17 MLLPIFLFIFLIILSNPSLHSLSLSDEGLFLHSIKLSLDDPDAALRSWDLRDATPCAWSGVTCSPTTTSVVAVDLSNSNIAGPFPSLICRLRNLTSLSLSNNSINMSLPSAISLCSTLRHLDLSQNLLTGEIPSSISDLPNLRYLDLTGNNFSGDIPASFALFPKLEVLSLVFNLLDGPVPAFLGNITSLKMLNLSYNPFAPSKIPVEFGNLTNLEVLWLTQCNLIGEIPGSLGRLKRLTDLDLALNNLDGLIPESLMGLSSVVQIELYNNSLTGNLPSGFSNLRSLRLFDASMNGLTGEIPDELCRLPLESLNLYENRFEGKLPESIANSPALYELRLFSNRLTGELPRDLGKNSPLRWIDVSDNQFSGELPESLCSKGELDELLMINNQFSGEIPASFGECVSLTRVRLGNNRFSGEVPAGFWGLPHVYLFELISNFFSGEIAGNIATAKNLSIFIISKNNFTGAIPAEIGRLENLVKIIATDNKLNGSLPESLVNLRHLSSLDLRNNEISGEIPNGIKSWKNLNELDLANNEFSGEIPEEIGALRVLNYLDLSGNLFSGNIPNGLQNLNLNLLNLSYNHLSGQLPPFLAKGNHGNSFLGNPDLCGHLERLCNSKGEANSEGYLWLLRLIFAVAGIMFLVGVVWFYLRYRKFKIAKREMEKGKWTLMSFHKLDFSEYEILDCLDDDNIIGSGASGKVYKVVLNNGEAVAVKKLFGGMRKEGEKGGDVEKGQVLDNGFESEIDTLGKIRHKNIVKLWCCCVTRDYKLLVYEYMPNGSLGDLIHSGKKGLLNWPTRFKIALDVAEGLSYLHHDCVPPIVHRDVKSNNILLDGDFGARLADFGVAKVFDSTPKGPQSMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELITGRLPNDPEFGEKDLVKWVCFTLDQDGIDQVIDPKLESCFKEEICRVVNIGLLCTSPLPINRPSMRKVVKMLQEVGAENQFKTNNKDGKLTPYYYENGSDQGSVA 999
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 36104350 36107959 - Sed0024735.1 Sed08g2241 724017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2241 999 SMART LRR_typ_2 284 308 IPR003591 -
Sed08g2241 999 SMART LRR_typ_2 187 211 IPR003591 -
Sed08g2241 999 SMART LRR_typ_2 236 259 IPR003591 -
Sed08g2241 999 SMART LRR_typ_2 547 570 IPR003591 -
Sed08g2241 999 SMART LRR_typ_2 499 522 IPR003591 -
Sed08g2241 999 SMART LRR_typ_2 139 162 IPR003591 -
Sed08g2241 999 SMART LRR_typ_2 91 115 IPR003591 -
Sed08g2241 999 SMART serkin_6 685 952 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g2241 999 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 24 187 - -
Sed08g2241 999 SUPERFAMILY L domain-like 37 375 - -
Sed08g2241 999 SMART LRR_sd22_2 115 141 - -
Sed08g2241 999 SMART LRR_sd22_2 91 108 - -
Sed08g2241 999 SMART LRR_sd22_2 499 528 - -
Sed08g2241 999 SMART LRR_sd22_2 236 262 - -
Sed08g2241 999 Gene3D Phosphorylase Kinase; domain 1 652 773 - -
Sed08g2241 999 ProSitePatterns Protein kinases ATP-binding region signature. 691 714 IPR017441 GO:0005524(InterPro)
Sed08g2241 999 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
Sed08g2241 999 Pfam Leucine rich repeat 92 152 IPR001611 GO:0005515(InterPro)
Sed08g2241 999 FunFam Receptor-like protein kinase HSL1 309 616 - -
Sed08g2241 999 SUPERFAMILY L domain-like 310 591 - -
Sed08g2241 999 Gene3D Ribonuclease Inhibitor 22 200 IPR032675 -
Sed08g2241 999 SUPERFAMILY Protein kinase-like (PK-like) 678 966 IPR011009 -
Sed08g2241 999 ProSiteProfiles Leucine-rich repeat profile. 93 115 IPR001611 GO:0005515(InterPro)
Sed08g2241 999 Gene3D Ribonuclease Inhibitor 204 308 IPR032675 -
Sed08g2241 999 Gene3D Ribonuclease Inhibitor 310 617 IPR032675 -
Sed08g2241 999 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 10 969 IPR050647 -
Sed08g2241 999 Gene3D Transferase(Phosphotransferase) domain 1 774 991 - -
Sed08g2241 999 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 774 983 - -
Sed08g2241 999 Pfam Leucine Rich Repeat 525 547 IPR001611 GO:0005515(InterPro)
Sed08g2241 999 Pfam Leucine Rich Repeat 358 377 IPR001611 GO:0005515(InterPro)
Sed08g2241 999 Pfam Leucine Rich Repeat 572 592 IPR001611 GO:0005515(InterPro)
Sed08g2241 999 Pfam Leucine Rich Repeat 501 522 IPR001611 GO:0005515(InterPro)
Sed08g2241 999 Pfam Leucine Rich Repeat 265 284 IPR001611 GO:0005515(InterPro)
Sed08g2241 999 Pfam Leucine Rich Repeat 189 212 IPR001611 GO:0005515(InterPro)
Sed08g2241 999 Pfam Leucine Rich Repeat 214 236 IPR001611 GO:0005515(InterPro)
Sed08g2241 999 Pfam Leucine Rich Repeat 310 330 IPR001611 GO:0005515(InterPro)
Sed08g2241 999 Pfam Leucine Rich Repeat 550 571 IPR001611 GO:0005515(InterPro)
Sed08g2241 999 Pfam Protein kinase domain 688 902 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g2241 999 ProSiteProfiles Protein kinase domain profile. 685 976 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g2241 999 FunFam Leucine-rich receptor-like protein kinase family protein 205 303 - -
Sed08g2241 999 ProSitePatterns Serine/Threonine protein kinases active-site signature. 818 830 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g2241 999 FunFam Receptor-like protein kinase HSL1 668 773 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1525 Sed-Chr5:28939541 Sed08g2241 Sed-Chr8:36104350 1.90E-81 dispersed
Sed08g2241 Sed-Chr8:36104350 Sed10g0775 Sed-Chr10:5481805 1.10E-87 dispersed
Sed14g0189 Sed-Chr14:2101758 Sed08g2241 Sed-Chr8:36104350 4.80E-58 dispersed
Sed04g3257 Sed-Chr4:43067962 Sed08g2241 Sed-Chr8:36104350 4.80E-152 transposed
Sed01g2129 Sed-Chr1:16000128 Sed08g2241 Sed-Chr8:36104350 4.30E-249 wgd
Sed14g1490 Sed-Chr14:23242860 Sed08g2241 Sed-Chr8:36104350 1.50E-15 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79681 PF00069 Pkinase 5.60E-43 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2241 - - - 0.0