Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed08g2263 | ATGGGGGAAGATGCTAATTCTTGGTTAAGAAGAACCAGTTTTTCTCACACGATATGCTACCGTTTAGAGTCCTTACGATTGGGTTCGTTTCCGGTCACCACTCATCCACCCCTCAATTCAGTTGTGCAGTCAAATACTGTCACAGCTCCTTCTCATCATAGAACTACCATTCGTGAGAATGTCGATGTTCTTAACAAGCCGAGGTCTCTGTCTCCGCCTTCACAAACTACACTCTCGGGCGCATTTAAGGATGCACGTAGTGATCAGAAGCGATTTTCAACTCCACAACCTCGGAGGAGAGAACCTAGAAAAGAGGAGGGTAAAAGTCTATTGAGTAAAGAAGCTAAGGTGCACAATTCCTCAAAGGAAGAGAAGTTGAGAAGCCCTCTGAGGAATTTTGCCTCATTTAAAGACAATAAGAAATCCAAGTCCAGAAAGGAGTCTTCTTGGACCAAGTTTTTTGAGCACGGTGGAGGGAAAGTCACTGCTGTTGAAGCTGTAGATGAATTCTCGGTCGACTTGTCTGAGTTGTATTTTGGGCCTAGATTTGCTTATGGAGCTCATAGTCGGCTTTACCATGGATGTTATTATGAAAAAGTTGTTGCTATTAAGAGCATCGATCTACCGAAAGGTGACGAAAATGGAGATCTCGCAGCTCGCCTAATAAAGCTGTTTTGTAGTGAAGTAACCCTTTTATCTCGTCTTCACCATCCCAATGTTCTAAAGCTGGTGTCAGCTTTTAAAAAGCCTCCTACTTATTGGATCATCACCGAGTATCTATCTCAAGGTTCATTAAGGGCATATCTACATAGACTTGAAAACAAATCTCTCCCACTGCAAAAACTCATTGCCATGGCCTTGGACATTGCTCGTGGGATGGAATACATTCACTCGCAAGGCGTCATTCATCGTGATCTCAAACCTGAAAATATCCTTATCGATCAAGACTTTCATCTAAAGATTGCCGATTTCGGCATTTCTTGTGAGGAAGCACATTGTGATACACTGGTCGACGACCCGGGAACTTATCGTTGGATGGCCCCTGAGATGATCAAACATAAATCTTACGGACGAAAGGTTGATCTCTACAGCTTTGGACTTATCCTGTGGGAATTGGTGGCTGGAAGAATCCCTTTTGAGAATATGACTCCCATCCAAGCAGCCTATGCAGTTGTGAATAAGAATATCAGACCGGTCATCCCGAACGAGTGTCCCTCGGTGATTGGGGCGTTAATCGAGCAATGTTGGTCGTTGCAACCGGAGAAGAGGCCGGAGTTTTGGCAGGTGGTGAAAGTACTAGAGCAACTAGAAAGTTCAGTTGGGGGAGATGGGACATTGATGAATGTAGAGCAGAAGCCAAGTTGGGAAGATCACAAGAAAGGTTTAAAGCATTGGATGCAAAAGCATGGTCCTCATCATTCTCAGACTTCTCTGACCTCCAAACCTAAATTCATATGA | 1458 | 44.03 | MGEDANSWLRRTSFSHTICYRLESLRLGSFPVTTHPPLNSVVQSNTVTAPSHHRTTIRENVDVLNKPRSLSPPSQTTLSGAFKDARSDQKRFSTPQPRRREPRKEEGKSLLSKEAKVHNSSKEEKLRSPLRNFASFKDNKKSKSRKESSWTKFFEHGGGKVTAVEAVDEFSVDLSELYFGPRFAYGAHSRLYHGCYYEKVVAIKSIDLPKGDENGDLAARLIKLFCSEVTLLSRLHHPNVLKLVSAFKKPPTYWIITEYLSQGSLRAYLHRLENKSLPLQKLIAMALDIARGMEYIHSQGVIHRDLKPENILIDQDFHLKIADFGISCEEAHCDTLVDDPGTYRWMAPEMIKHKSYGRKVDLYSFGLILWELVAGRIPFENMTPIQAAYAVVNKNIRPVIPNECPSVIGALIEQCWSLQPEKRPEFWQVVKVLEQLESSVGGDGTLMNVEQKPSWEDHKKGLKHWMQKHGPHHSQTSLTSKPKFI | 485 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 36241638 | 36244527 | + | Sed0020551.1 | Sed08g2263 | 724039 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed08g2263 | 485 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 301 | 313 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed08g2263 | 485 | MobiDBLite | consensus disorder prediction | 471 | 485 | - | - | |
Sed08g2263 | 485 | FunFam | serine/threonine-protein kinase HT1 | 262 | 454 | - | - | |
Sed08g2263 | 485 | MobiDBLite | consensus disorder prediction | 67 | 83 | - | - | |
Sed08g2263 | 485 | PRINTS | Tyrosine kinase catalytic domain signature | 257 | 270 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed08g2263 | 485 | PRINTS | Tyrosine kinase catalytic domain signature | 404 | 426 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed08g2263 | 485 | PRINTS | Tyrosine kinase catalytic domain signature | 295 | 313 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed08g2263 | 485 | PRINTS | Tyrosine kinase catalytic domain signature | 360 | 382 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed08g2263 | 485 | PRINTS | Tyrosine kinase catalytic domain signature | 341 | 351 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed08g2263 | 485 | Pfam | Protein tyrosine and serine/threonine kinase | 185 | 433 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed08g2263 | 485 | Gene3D | Transferase(Phosphotransferase) domain 1 | 262 | 474 | - | - | |
Sed08g2263 | 485 | SUPERFAMILY | Protein kinase-like (PK-like) | 166 | 433 | IPR011009 | - | |
Sed08g2263 | 485 | MobiDBLite | consensus disorder prediction | 84 | 141 | - | - | |
Sed08g2263 | 485 | ProSiteProfiles | Protein kinase domain profile. | 177 | 436 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed08g2263 | 485 | MobiDBLite | consensus disorder prediction | 465 | 485 | - | - | |
Sed08g2263 | 485 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 106 | 436 | IPR050167 | GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER) | |
Sed08g2263 | 485 | CDD | STKc_MAP3K-like | 186 | 433 | - | - | |
Sed08g2263 | 485 | SMART | serkin_6 | 177 | 436 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed08g2263 | 485 | MobiDBLite | consensus disorder prediction | 64 | 141 | - | - | |
Sed08g2263 | 485 | Gene3D | Phosphorylase Kinase; domain 1 | 165 | 261 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed08g2263 | Sed-Chr8:36241638 | Sed08g2502 | Sed-Chr8:37827648 | 1.20E-87 | dispersed | |
Sed08g2263 | Sed-Chr8:36241638 | Sed08g2264 | Sed-Chr8:36241638 | 4.10E-229 | tandem | |
Sed01g2111 | Sed-Chr1:15831979 | Sed08g2263 | Sed-Chr8:36241638 | 1.00E-211 | wgd | |
Sed10g0302 | Sed-Chr10:1804740 | Sed08g2263 | Sed-Chr8:36241638 | 2.70E-167 | wgd | |
Sed14g1459 | Sed-Chr14:23070659 | Sed08g2263 | Sed-Chr8:36241638 | 4.70E-161 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79682 | PF07714 | PK_Tyr_Ser-Thr | 1.60E-58 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed08g2263 | - | - | - | 0.0 |