Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2263 ATGGGGGAAGATGCTAATTCTTGGTTAAGAAGAACCAGTTTTTCTCACACGATATGCTACCGTTTAGAGTCCTTACGATTGGGTTCGTTTCCGGTCACCACTCATCCACCCCTCAATTCAGTTGTGCAGTCAAATACTGTCACAGCTCCTTCTCATCATAGAACTACCATTCGTGAGAATGTCGATGTTCTTAACAAGCCGAGGTCTCTGTCTCCGCCTTCACAAACTACACTCTCGGGCGCATTTAAGGATGCACGTAGTGATCAGAAGCGATTTTCAACTCCACAACCTCGGAGGAGAGAACCTAGAAAAGAGGAGGGTAAAAGTCTATTGAGTAAAGAAGCTAAGGTGCACAATTCCTCAAAGGAAGAGAAGTTGAGAAGCCCTCTGAGGAATTTTGCCTCATTTAAAGACAATAAGAAATCCAAGTCCAGAAAGGAGTCTTCTTGGACCAAGTTTTTTGAGCACGGTGGAGGGAAAGTCACTGCTGTTGAAGCTGTAGATGAATTCTCGGTCGACTTGTCTGAGTTGTATTTTGGGCCTAGATTTGCTTATGGAGCTCATAGTCGGCTTTACCATGGATGTTATTATGAAAAAGTTGTTGCTATTAAGAGCATCGATCTACCGAAAGGTGACGAAAATGGAGATCTCGCAGCTCGCCTAATAAAGCTGTTTTGTAGTGAAGTAACCCTTTTATCTCGTCTTCACCATCCCAATGTTCTAAAGCTGGTGTCAGCTTTTAAAAAGCCTCCTACTTATTGGATCATCACCGAGTATCTATCTCAAGGTTCATTAAGGGCATATCTACATAGACTTGAAAACAAATCTCTCCCACTGCAAAAACTCATTGCCATGGCCTTGGACATTGCTCGTGGGATGGAATACATTCACTCGCAAGGCGTCATTCATCGTGATCTCAAACCTGAAAATATCCTTATCGATCAAGACTTTCATCTAAAGATTGCCGATTTCGGCATTTCTTGTGAGGAAGCACATTGTGATACACTGGTCGACGACCCGGGAACTTATCGTTGGATGGCCCCTGAGATGATCAAACATAAATCTTACGGACGAAAGGTTGATCTCTACAGCTTTGGACTTATCCTGTGGGAATTGGTGGCTGGAAGAATCCCTTTTGAGAATATGACTCCCATCCAAGCAGCCTATGCAGTTGTGAATAAGAATATCAGACCGGTCATCCCGAACGAGTGTCCCTCGGTGATTGGGGCGTTAATCGAGCAATGTTGGTCGTTGCAACCGGAGAAGAGGCCGGAGTTTTGGCAGGTGGTGAAAGTACTAGAGCAACTAGAAAGTTCAGTTGGGGGAGATGGGACATTGATGAATGTAGAGCAGAAGCCAAGTTGGGAAGATCACAAGAAAGGTTTAAAGCATTGGATGCAAAAGCATGGTCCTCATCATTCTCAGACTTCTCTGACCTCCAAACCTAAATTCATATGA 1458 44.03 MGEDANSWLRRTSFSHTICYRLESLRLGSFPVTTHPPLNSVVQSNTVTAPSHHRTTIRENVDVLNKPRSLSPPSQTTLSGAFKDARSDQKRFSTPQPRRREPRKEEGKSLLSKEAKVHNSSKEEKLRSPLRNFASFKDNKKSKSRKESSWTKFFEHGGGKVTAVEAVDEFSVDLSELYFGPRFAYGAHSRLYHGCYYEKVVAIKSIDLPKGDENGDLAARLIKLFCSEVTLLSRLHHPNVLKLVSAFKKPPTYWIITEYLSQGSLRAYLHRLENKSLPLQKLIAMALDIARGMEYIHSQGVIHRDLKPENILIDQDFHLKIADFGISCEEAHCDTLVDDPGTYRWMAPEMIKHKSYGRKVDLYSFGLILWELVAGRIPFENMTPIQAAYAVVNKNIRPVIPNECPSVIGALIEQCWSLQPEKRPEFWQVVKVLEQLESSVGGDGTLMNVEQKPSWEDHKKGLKHWMQKHGPHHSQTSLTSKPKFI 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 36241638 36244527 + Sed0020551.1 Sed08g2263 724039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2263 485 ProSitePatterns Serine/Threonine protein kinases active-site signature. 301 313 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g2263 485 MobiDBLite consensus disorder prediction 471 485 - -
Sed08g2263 485 FunFam serine/threonine-protein kinase HT1 262 454 - -
Sed08g2263 485 MobiDBLite consensus disorder prediction 67 83 - -
Sed08g2263 485 PRINTS Tyrosine kinase catalytic domain signature 257 270 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g2263 485 PRINTS Tyrosine kinase catalytic domain signature 404 426 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g2263 485 PRINTS Tyrosine kinase catalytic domain signature 295 313 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g2263 485 PRINTS Tyrosine kinase catalytic domain signature 360 382 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g2263 485 PRINTS Tyrosine kinase catalytic domain signature 341 351 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g2263 485 Pfam Protein tyrosine and serine/threonine kinase 185 433 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g2263 485 Gene3D Transferase(Phosphotransferase) domain 1 262 474 - -
Sed08g2263 485 SUPERFAMILY Protein kinase-like (PK-like) 166 433 IPR011009 -
Sed08g2263 485 MobiDBLite consensus disorder prediction 84 141 - -
Sed08g2263 485 ProSiteProfiles Protein kinase domain profile. 177 436 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g2263 485 MobiDBLite consensus disorder prediction 465 485 - -
Sed08g2263 485 PANTHER SERINE-THREONINE PROTEIN KINASE 106 436 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Sed08g2263 485 CDD STKc_MAP3K-like 186 433 - -
Sed08g2263 485 SMART serkin_6 177 436 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g2263 485 MobiDBLite consensus disorder prediction 64 141 - -
Sed08g2263 485 Gene3D Phosphorylase Kinase; domain 1 165 261 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2263 Sed-Chr8:36241638 Sed08g2502 Sed-Chr8:37827648 1.20E-87 dispersed
Sed08g2263 Sed-Chr8:36241638 Sed08g2264 Sed-Chr8:36241638 4.10E-229 tandem
Sed01g2111 Sed-Chr1:15831979 Sed08g2263 Sed-Chr8:36241638 1.00E-211 wgd
Sed10g0302 Sed-Chr10:1804740 Sed08g2263 Sed-Chr8:36241638 2.70E-167 wgd
Sed14g1459 Sed-Chr14:23070659 Sed08g2263 Sed-Chr8:36241638 4.70E-161 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79682 PF07714 PK_Tyr_Ser-Thr 1.60E-58 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2263 - - - 0.0