Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2264 ATGGGGGAAGATGCTAATTCTTGGTTAAGAAGAACCAGTTTTTCTCACACGATATGCTACCGTTTAGAGTCCTTACGATTGGGTTCGTTTCCGGTCACCACTCATCCACCCCTCAATTCAGTTGTGCAGTCAAATACTGTCACAGCTCCTTCTCATCATAGAACTACCATTCGTGAGAATGTCGATGTTCTTAACAAGCCGAGGTCTCTGTCTCCGCCTTCACAAACTACACTCTCGGGCGCATTTAAGGATGCACGTAGTGATCAGAAGCGATTTTCAACTCCACAACCTCGGAGGAGAGAACCTAGAAAAGAGGAGGGTAAAAGTCTATTGAGTAAAGAAGCTAAGGTGCACAATTCCTCAAAGGAAGAGAAGTTGAGAAGCCCTCTGAGGAATTTTGCCTCATTTAAAGACAATAAGAAATCCAAGTCCAGAAAGGAGTCTTCTTGGACCAAGTTTTTTGAGCACGGTGGAGGGAAAGTCACTGCTGTTGAAGCTGTAGATGAATTCTCGGTCGACTTGTCTGAGTTGTATTTTGGGCCTAGATTTGCTTATGGAGCTCATAGTCGGCTTTACCATGGATGTTATTATGAAAAAGTTGTTGCTATTAAGAGCATCGATCTACCGAAAGGTGACGAAAATGGAGATCTCGCAGCTCGCCTAATAAAGCTGTTTTGTAGTGAAGTAACCCTTTTATCTCGTCTTCACCATCCCAATGTTCTAAAGCTGGTGTCAGCTTTTAAAAAGCCTCCTACTTATTGGATCATCACCGAGTATCTATCTCAAGGTTCATTAAGGGCATATCTACATAGACTTGAAAACAAATCTCTCCCACTGCAAAAACTCATTGCCATGGCCTTGGACATTGCTCGTGGGATGGAATACATTCACTCGCAAGGCGTCATTCATCGTGATCTCAAACCTGAAAATATCCTTATCGATCAAGACTTTCATCTAAAGATTGCCGATTTCGGCATTTCTTGTGAGGAAGCACATTGTGATACACTGGTCGACGACCCGGGAACTTATCGTTGGATGGCCCCTGAGATGATCAAACATAAATCTTACGGACGAAAGGTTGATCTCTACAGCTTTGGACTTATCCTGTGGGAATTGGTGGCTGGAAGAATCCCTTTTGAGAATATGACTCCCATCCAAGCAGCCTATGCAGTTGTGAATAAGGTACTAGTTGTTTTGTACCATCTTCATTTACCAACTTATCTCTTCACATCTGGAACATTGACACTGTTGTTTCTTTCAGAATATCAGACCGGTCATCCCGAACGAGTGTCCCTCGGTGATTGGGGCGTTAATCGAGCAATGTTGGTCGTTGCAACCGGAGAAGAGGCCGGAGTTTTGGCAGGTGGTGAAAGTACTAGAGCAACTAGAAAGTTCAGTTGGGGGAGATGGGACATTGATGAATGTAGAGCAGAAGCCAAGTTGGGAAGATCACAAGAAAGGTTTAAAGCATTGGATGCAAAAGCATGGTCCTCATCATTCTCAGACTTCTCTGACCTCCAAACCTAA 1527 43.75 MGEDANSWLRRTSFSHTICYRLESLRLGSFPVTTHPPLNSVVQSNTVTAPSHHRTTIRENVDVLNKPRSLSPPSQTTLSGAFKDARSDQKRFSTPQPRRREPRKEEGKSLLSKEAKVHNSSKEEKLRSPLRNFASFKDNKKSKSRKESSWTKFFEHGGGKVTAVEAVDEFSVDLSELYFGPRFAYGAHSRLYHGCYYEKVVAIKSIDLPKGDENGDLAARLIKLFCSEVTLLSRLHHPNVLKLVSAFKKPPTYWIITEYLSQGSLRAYLHRLENKSLPLQKLIAMALDIARGMEYIHSQGVIHRDLKPENILIDQDFHLKIADFGISCEEAHCDTLVDDPGTYRWMAPEMIKHKSYGRKVDLYSFGLILWELVAGRIPFENMTPIQAAYAVVNKVLVVLYHLHLPTYLFTSGTLTLLFLSEYQTGHPERVSLGDWGVNRAMLVVATGEEAGVLAGGESTRATRKFSWGRWDIDECRAEAKLGRSQERFKALDAKAWSSSFSDFSDLQT 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 36241638 36244527 + Sed0020551.2 Sed08g2264 724040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2264 508 ProSitePatterns Serine/Threonine protein kinases active-site signature. 301 313 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g2264 508 Pfam Protein kinase domain 189 394 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g2264 508 CDD STKc_MAP3K-like 186 394 - -
Sed08g2264 508 ProSiteProfiles Protein kinase domain profile. 177 442 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g2264 508 MobiDBLite consensus disorder prediction 67 83 - -
Sed08g2264 508 Gene3D Transferase(Phosphotransferase) domain 1 169 412 - -
Sed08g2264 508 PANTHER SERINE-THREONINE PROTEIN KINASE 106 394 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Sed08g2264 508 PRINTS Tyrosine kinase catalytic domain signature 360 382 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g2264 508 PRINTS Tyrosine kinase catalytic domain signature 341 351 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g2264 508 PRINTS Tyrosine kinase catalytic domain signature 257 270 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g2264 508 PRINTS Tyrosine kinase catalytic domain signature 295 313 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g2264 508 MobiDBLite consensus disorder prediction 84 141 - -
Sed08g2264 508 SMART serkin_6 177 407 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g2264 508 MobiDBLite consensus disorder prediction 64 141 - -
Sed08g2264 508 SUPERFAMILY Protein kinase-like (PK-like) 168 401 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2111 Sed-Chr1:15831979 Sed08g2264 Sed-Chr8:36241638 3.60E-164 dispersed
Sed08g2264 Sed-Chr8:36241638 Sed10g0302 Sed-Chr10:1804740 4.90E-132 dispersed
Sed08g2263 Sed-Chr8:36241638 Sed08g2264 Sed-Chr8:36241638 4.10E-229 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79683 PF00069 Pkinase 1.60E-51 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2264 - - - 0.0