Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2265 ATGAACCCACCTTCTTCATTTCTCACTTTCCCCTGTTCTTACTCTGCTTCAATGGCGGTTCTGCAACTCCCCATTCTCCTCTTCTTTTTCCCCCTTCTCTTCTCCACAGCATCCGCCATAGATTTCCTCTTCAACGGCTTCAACTCCACCGACCTCTCTCTCTACGGCAACGCCACCATCGAATCCTCTTTCCTCGCCCTCACCAACCAATCCAGCTTCTCTATCGGCCGCGCTCTGTTTCCCTCCAAAATCCCCACCAAAAACTCCACCGTCCTCCCCTTCTCCACCTCCTTCATCTTCGCCATGGCCCCTTTCAAGAACGTCCTCCCCGGCCACGGCCTCGTCTTCATCTTCGTTCCCGCCACCGGAATCGCCGGCACCACCTCTGCTCAGAATCTGGGGTTTCTCAATTTCACCAACAACGGAAACCCCACCAACCACATGCTTGGAATCGAGTTCGATGTCTTTCGCAACCAAGAATTCAACGACCCAAATGACAATCACGTCGGGATCAACTTTAATTCCTTGACCTCTAACTTCACTGGCGATGCTGGGTTTTGGCCCGACCACGGCGGGCCGTTGAATAAGTTTAGGCTTAATAGCGGCGAGAATTACCAAGTCTGGGTTGACTATTTCGGCTTTGAGATGAATGTTACAATTGCTCCGGCGGGAATGAAGAAGCCACGGCGGCCGTTGATTAACGCCGCCGTCAATCTCTCTGAGATTTTCTTGGATGAAATGTACGTGGGGTTCACCGGCGCCACCGGGCAGTTAGTTCAGGGTCACAACGTTTTAGCTTGGAGTTTCAGCAACACGAATTTTTCGTTGAGTGACGGTTTGATTACTTCTGGATTGCCGTCGTTCGTTCTTCCAAAAGACCCGTTTACCAAATCGAAATGGTTCATCGCCGCCGTGACCGTCGGCGGAGTTATTGCCGTTTGTTTTGTCGCTACGATTTTGGGGGTTTTGATCGCCGATCACCGGAGGAGAGCGAAGGAGAGAGCGGAAATGGAGGATTGGGAATTGGAGTATTGGCCGCATAGGATTACTTATCAAGAAATCGAAACGGCGACGAAGGGATTTGCAGAAGAAAACGTCATCGGAATCGGTGGCAACGGGAAAGTTCATAAAGGGGTTTTGGCCGGCGGTGGGTTTGAAGTTGCAGTGAAGCGAATTTCCCACGAAAACGATGGGATGCGAGAATTTTTAGCTGAGATTTCGAGTATTGGGAGATTAAAGCATAGAAATCTTGTGAGTTTGAGAGGTTGGTGCAAGAAAGAGAAGGGGAATTTCTTATTGGTTTATGATTATATGGAAAATGGAAGTTTGGATCAATGGATATTTGATTGCGACGAGAGAAAAATGTTGAGTTATGATGATCGAATTAGGATATTGAAAAACGTAGCATCTGGGGTTTTGTATCTACATGAAGGTTGGGAATCGAAGGTGCTACATAGGGATATAAAAGCTAGTAATGTGTTGCTAGATAAAGACATGAATGGTAGGCTAGGAGATTTCGGCTTGGCTCGAGTCCACGGCCATGGCCAAGTGGCTACCACGACTAGAGTTGTTGGCACGATGGGCTACATCTCACCCGAGTTGGTTCGGACCGGGCGAGCATCGGCTCAATCGGACGTGTTTGGTTTTGGTGTTTTGATTTTGGAAGTGATGTGTGGGAGGAGGCCAATAGAAGTAGGGAAGCCGCCATTGGTGGATTGGGTTCGGCAGTTGGTCGTTGAAGGGGAGTTGATGGCAGCGCTTGATGAGAGGCTGGGGAAGAAGGGCGGGTGGAGCGAGGAGGAAGTCGAGAGAGTGTTGCATTTGGGATTGTTGTGTACGTATCCTGACCCGAACACTCGGCCGACGATGAGGCAAATAGTGAAGGTTTTGGATGGGAAAATTGAGTTGGATGAAAATGAGAGTGAGAGTATGAATGCTTATTTGCTTCAAAGATTGAAGTCACCAGGAAAATGGTATGGTTCTAGTGATGGTTTTGGGCATAAATTGCATCCAACTTTTGATGATTTTCTTCAATCTTCTTCAACTTCCCTTTCTTGGTCTACTTCCATTGTCAATGGCAGGTGA 2085 48.39 MNPPSSFLTFPCSYSASMAVLQLPILLFFFPLLFSTASAIDFLFNGFNSTDLSLYGNATIESSFLALTNQSSFSIGRALFPSKIPTKNSTVLPFSTSFIFAMAPFKNVLPGHGLVFIFVPATGIAGTTSAQNLGFLNFTNNGNPTNHMLGIEFDVFRNQEFNDPNDNHVGINFNSLTSNFTGDAGFWPDHGGPLNKFRLNSGENYQVWVDYFGFEMNVTIAPAGMKKPRRPLINAAVNLSEIFLDEMYVGFTGATGQLVQGHNVLAWSFSNTNFSLSDGLITSGLPSFVLPKDPFTKSKWFIAAVTVGGVIAVCFVATILGVLIADHRRRAKERAEMEDWELEYWPHRITYQEIETATKGFAEENVIGIGGNGKVHKGVLAGGGFEVAVKRISHENDGMREFLAEISSIGRLKHRNLVSLRGWCKKEKGNFLLVYDYMENGSLDQWIFDCDERKMLSYDDRIRILKNVASGVLYLHEGWESKVLHRDIKASNVLLDKDMNGRLGDFGLARVHGHGQVATTTRVVGTMGYISPELVRTGRASAQSDVFGFGVLILEVMCGRRPIEVGKPPLVDWVRQLVVEGELMAALDERLGKKGGWSEEEVERVLHLGLLCTYPDPNTRPTMRQIVKVLDGKIELDENESESMNAYLLQRLKSPGKWYGSSDGFGHKLHPTFDDFLQSSSTSLSWSTSIVNGR 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 36246975 36249371 - Sed0006835.1 Sed08g2265 724041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2265 694 ProSiteProfiles Protein kinase domain profile. 361 648 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g2265 694 CDD lectin_legume_LecRK_Arcelin_ConA 40 272 IPR001220 GO:0030246(InterPro)
Sed08g2265 694 PANTHER - 47 636 IPR050528 GO:0005886(PANTHER)
Sed08g2265 694 ProSitePatterns Serine/Threonine protein kinases active-site signature. 483 495 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g2265 694 FunFam L-type lectin-domain containing receptor kinase V.9 38 279 - -
Sed08g2265 694 Pfam Legume lectin domain 40 273 IPR001220 GO:0030246(InterPro)
Sed08g2265 694 SUPERFAMILY Concanavalin A-like lectins/glucanases 38 277 IPR013320 -
Sed08g2265 694 CDD STKc_IRAK 367 632 - -
Sed08g2265 694 Gene3D Transferase(Phosphotransferase) domain 1 438 651 - -
Sed08g2265 694 SMART serkin_6 361 630 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g2265 694 Pfam Protein kinase domain 362 628 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g2265 694 ProSitePatterns Protein kinases ATP-binding region signature. 367 390 IPR017441 GO:0005524(InterPro)
Sed08g2265 694 FunFam L-type lectin-domain containing receptor kinase S.4 438 643 - -
Sed08g2265 694 Gene3D - 38 277 - -
Sed08g2265 694 FunFam Putative L-type lectin-domain containing receptor kinase VII.2 323 437 - -
Sed08g2265 694 SUPERFAMILY Protein kinase-like (PK-like) 339 630 IPR011009 -
Sed08g2265 694 Gene3D Phosphorylase Kinase; domain 1 323 437 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1961 Sed-Chr5:32926730 Sed08g2265 Sed-Chr8:36246975 9.30E-195 dispersed
Sed08g2265 Sed-Chr8:36246975 Sed14g0524 Sed-Chr14:5196773 5.90E-136 dispersed
Sed08g0078 Sed-Chr8:423906 Sed08g2265 Sed-Chr8:36246975 8.20E-140 transposed
Sed04g3367 Sed-Chr4:43710659 Sed08g2265 Sed-Chr8:36246975 1.00E-193 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79684 PF00069 Pkinase 1.80E-45 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2265 - - - 0.0