Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2301 ATGAACGACTTATTTTCAAATTCGTTCAAAAAATACACGGATTTAAAAGAACAAGCTTATTTGGACAGCTTGGAGGCTGGAAATGAGAGTGTAAATCTGGACAAGTTTTTCGAGGATGTCGAAAATGTTAAGGATGAGATGAAACAGGTCGAGAATTTGTACAAGAAATTGCAACAAGACAATGGGGAGTGTAAGATTGTGCATAATGCCAAGACCGTTAAGCAGCTCAGGGCTCGAATGGAGACCGATGTGGCTCAGGTTCTTAAGCGAGTTAAGATGATTAAAGGCAAGCTCGAGGCTCTCGACCGGTCCAATGTCGCGCACCGGAACATCCCCGGGTGCGGCCCGGGCTCTTCCGCTGATCGGACTCGAACCTCGGTTGTTAGTGGCTTGGGGAAGAAGCTTAAAGATGTTATGGATGATTTTCAAGGCCTTAGAGCTCGAATGAACGCCGAGTATAAAGAAACCGTTGAGCGAAGATACTTCACAGTGACAGGGCAGAAAGCAGACGAAGAGACAATAGAGAACTTAATATCAAGTGGAGAAAGCGAGAGCTTCCTACAGAAAGCAATTCAAGAACAGGGGAGGGGTCAAATAATGGACACCATTTCAGAGATTCAAGAACGCCACGACGCGGTCAAGGAGATCGAGAAGAACCTGCTCGAGCTGCACCAGATTTTCCTCGACATGGCGGCCCTGGTCGAGGCCCAAGGCCACCAGCTCAACGACATCGAAAGCCACGTGGCTCATGCGAGTTCGTTCGTAAGAAGAGGAACAGAGCAGCTTCAAGAAGCTCGAGAGCACCAGAAAAGCTCCAGAAAATGGACGTGTTATGCCATCCTTTTGGGCATTGTTCTTATTATCATTCTTCTCTTCCCAATCCTCAACGCCATTTTGCCTCATTTGCTGCACTAG 915 47.32 MNDLFSNSFKKYTDLKEQAYLDSLEAGNESVNLDKFFEDVENVKDEMKQVENLYKKLQQDNGECKIVHNAKTVKQLRARMETDVAQVLKRVKMIKGKLEALDRSNVAHRNIPGCGPGSSADRTRTSVVSGLGKKLKDVMDDFQGLRARMNAEYKETVERRYFTVTGQKADEETIENLISSGESESFLQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLLELHQIFLDMAALVEAQGHQLNDIESHVAHASSFVRRGTEQLQEAREHQKSSRKWTCYAILLGIVLIIILLFPILNAILPHLLH 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 36458517 36460443 - Sed0012645.1 Sed08g2301 724077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2301 304 Gene3D - 193 297 - -
Sed08g2301 304 SMART SynN_4 28 154 IPR006011 GO:0016020(InterPro)
Sed08g2301 304 CDD SNARE_syntaxin1-like 202 264 - -
Sed08g2301 304 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 30 160 - -
Sed08g2301 304 SMART tSNARE_6 198 265 IPR000727 -
Sed08g2301 304 ProSitePatterns Syntaxin / epimorphin family signature. 209 248 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Sed08g2301 304 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 203 265 IPR000727 -
Sed08g2301 304 FunFam Syntaxin 132 196 296 - -
Sed08g2301 304 Pfam SNARE domain 240 291 IPR000727 -
Sed08g2301 304 Coils Coil 33 60 - -
Sed08g2301 304 CDD SynN 33 190 IPR006011 GO:0016020(InterPro)
Sed08g2301 304 PANTHER SYNTAXIN 35 288 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Sed08g2301 304 Pfam Syntaxin 35 238 IPR006011 GO:0016020(InterPro)
Sed08g2301 304 Gene3D - 33 160 - -
Sed08g2301 304 SUPERFAMILY t-snare proteins 32 258 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2400 Sed-Chr3:20471050 Sed08g2301 Sed-Chr8:36458517 5.50E-70 dispersed
Sed08g2301 Sed-Chr8:36458517 Sed14g0266 Sed-Chr14:2800582 2.10E-74 dispersed
Sed12g1336 Sed-Chr12:10205518 Sed08g2301 Sed-Chr8:36458517 1.60E-91 transposed
Sed01g2057 Sed-Chr1:15405292 Sed08g2301 Sed-Chr8:36458517 4.00E-145 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2301 K08486 - csv:101217140 539.265