Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed08g2309 | ATGGGAATGCAGGGTTTGTACAGCACCGTTTCCAGACTTTTACAGGATCATCCTTCGTTTTCCAGGCTTCTTCTTCTTCTCACTCTTAGTGGGGGCAGCCTTGTAGCATATGCTGATGCTAGCTCAACCAATGTAGATAAGAAAAAGAAGGTGGTAGTGCTTGGAACTGGCTGGGCGGGAACAAGTTTCTTGAAGAATATTAAAGATCCCTCCTATGAGGTTCAAGTGATATCGCCTCGTAATTACTTTGCATTCACCCCATTATTGCCGAGTGTTACATGCGGTACAGTGGAAGCACGTAGCATTGTTGAACCGATCCGCAACATTGTGAGGAAGAAAGGGGTAGACATCAGATTCAATGAAGCGGAATGCTACAAGATTGATGCTGAAAATAGAAAACTCTATTGTCGTTCTAATGAAAGCAACAATCTGAATGGGAAAAAGGAATTTGTTGTGGACTACGACTACCTTGTGATTGCAGTGGGAGCACAAGTTAATACATTCAATACTCCTGGTGTTGTGGAGAATTGTCATTTCTTGAAGGAAGTGGAAGATGCTCAGAGAATTCGAAGAACTGTAATTGATTGCTTTGAGAGGGCAAGTCTGCCTACATTGAATGAAGAAGATAGAAAGAAAATTCTTCATTTTGCTATTGTTGGTGGTGGCCCAACTGGTGTGGAATTTGCAGCAGAACTTCATGATTTTGTTAACGAAGACTTGGTCAAATTATATCCTGGGCTCAATGATTTTGTAAAAATTACTCTTCTTGAGGCAGGAGATCATATCTTGAACATGTTTGACAAAAGAATTACAGCTTTTGCTGAAAATAAATTCCGTAGAGATGGTATTGATGTTAAAACTGGATCAATGGTAATCAAAGTTACTGATAAAGAGATCTCTACCAAGGAAATGAAGAATGGAGAAATATCTTCTGTGCCTTATGGAATGGCAGTATGGTCAACTGGTATTGGAACTCGTCCGATCATTAGGGATTTTATGTCACAGATTGGTCAGGCTAACAGACGTGCTTTAGCAACCGATGAATGGCTTCGAGTAGAGGGATGTGACAATGTATATGCACTTGGTGACTGCGCTACTATAAATCAGCGAAGAGTCATGGAAGATATTTCAGCAATTTTTAGCAAGGCCGATAGACACAATACTGGGACTCTTACAGTAAAAGAGTTTAAAGAAGTCATTGATGACATATGTGAAAGATATCCCCAAGTGGAGCTATATTTGAAGAACAAGCAGATGAACGAAATTGCTGATCTTTTGAGAGGATCGAAAGGGGATGTGGCAAAGGAGTCAATTGAATTAAAGATTGAAGAGTTTAAATCAGCTCTTTCTCAAGTTGATTCTCAAATGAAAAACCTTCCTGCTACAGCACAGGTGGCTGCGCAACAAGGTGCTTATCTTGCCCATTGTTTTAACCATATGGAGAATTGCGACGAAAATCCTGAAGGTCCTCTTAGGTATAGGGGATCAGGACGCCACCGTTTTCAGTCCTTTAGGTACAAACATCTTGGACAATTCGCACCATTGGGAGGTGAACAAACGGCTGCACAACTTCCTGGAGATTGGGTGTCCATTGGCCACAGCTCTCAGTGGCTCTGGTACTCTGTCTATGCAAGTAAGCAAGTTAGTTGGCGGACAAGAACACTGGTGGTTACGGATTGGACTAGGCGTTTCGTTTTCGGTAGAGATTCGAGTCGCATATGA | 1722 | 41.58 | MGMQGLYSTVSRLLQDHPSFSRLLLLLTLSGGSLVAYADASSTNVDKKKKVVVLGTGWAGTSFLKNIKDPSYEVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPIRNIVRKKGVDIRFNEAECYKIDAENRKLYCRSNESNNLNGKKEFVVDYDYLVIAVGAQVNTFNTPGVVENCHFLKEVEDAQRIRRTVIDCFERASLPTLNEEDRKKILHFAIVGGGPTGVEFAAELHDFVNEDLVKLYPGLNDFVKITLLEAGDHILNMFDKRITAFAENKFRRDGIDVKTGSMVIKVTDKEISTKEMKNGEISSVPYGMAVWSTGIGTRPIIRDFMSQIGQANRRALATDEWLRVEGCDNVYALGDCATINQRRVMEDISAIFSKADRHNTGTLTVKEFKEVIDDICERYPQVELYLKNKQMNEIADLLRGSKGDVAKESIELKIEEFKSALSQVDSQMKNLPATAQVAAQQGAYLAHCFNHMENCDENPEGPLRYRGSGRHRFQSFRYKHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRTRTLVVTDWTRRFVFGRDSSRI | 573 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 36489020 | 36494854 | + | Sed0023335.1 | Sed08g2309 | 724085 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed08g2309 | 573 | SUPERFAMILY | EF-hand | 329 | 459 | IPR011992 | - | |
Sed08g2309 | 573 | Pfam | NDH2 C-terminal domain | 508 | 569 | IPR054585 | - | |
Sed08g2309 | 573 | SUPERFAMILY | FAD/NAD(P)-binding domain | 48 | 267 | IPR036188 | - | |
Sed08g2309 | 573 | PANTHER | NADH DEHYDROGENASE | 39 | 573 | IPR045024 | GO:0003954(InterPro)|GO:0006116(InterPro) | |
Sed08g2309 | 573 | FunFam | External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial | 417 | 572 | - | - | |
Sed08g2309 | 573 | Pfam | Pyridine nucleotide-disulphide oxidoreductase | 49 | 372 | IPR023753 | GO:0016491(InterPro) | |
Sed08g2309 | 573 | Gene3D | - | 39 | 417 | - | - | |
Sed08g2309 | 573 | Gene3D | - | 418 | 572 | - | - | |
Sed08g2309 | 573 | ProSiteProfiles | EF-hand calcium-binding domain profile. | 371 | 406 | IPR002048 | GO:0005509(InterPro) | |
Sed08g2309 | 573 | PRINTS | FAD-dependent pyridine nucleotide reductase signature | 215 | 233 | - | - | |
Sed08g2309 | 573 | PRINTS | FAD-dependent pyridine nucleotide reductase signature | 154 | 172 | - | - | |
Sed08g2309 | 573 | PRINTS | FAD-dependent pyridine nucleotide reductase signature | 51 | 70 | - | - | |
Sed08g2309 | 573 | FunFam | External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial | 39 | 400 | - | - | |
Sed08g2309 | 573 | SUPERFAMILY | FAD/NAD(P)-binding domain | 215 | 368 | IPR036188 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g2056 | Sed-Chr1:15396139 | Sed08g2309 | Sed-Chr8:36489020 | 7.80E-307 | dispersed | |
Sed05g3116 | Sed-Chr5:41306384 | Sed08g2309 | Sed-Chr8:36489020 | 6.70E-258 | dispersed | |
Sed07g2160 | Sed-Chr7:37168772 | Sed08g2309 | Sed-Chr8:36489020 | 1.00E-06 | dispersed | |
Sed08g2309 | Sed-Chr8:36489020 | Sed14g0095 | Sed-Chr14:1003980 | 3.40E-12 | dispersed | |
Sed01g2055 | Sed-Chr1:15395884 | Sed08g2309 | Sed-Chr8:36489020 | 7.80E-307 | wgd | |
Sed14g1421 | Sed-Chr14:22825667 | Sed08g2309 | Sed-Chr8:36489020 | 4.20E-65 | wgd | |
Sed05g1975 | Sed-Chr5:33046015 | Sed08g2309 | Sed-Chr8:36489020 | 3.10E-231 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed08g2309 | K03885 | - | csv:101204145 | 1052.35 |