Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2309 ATGGGAATGCAGGGTTTGTACAGCACCGTTTCCAGACTTTTACAGGATCATCCTTCGTTTTCCAGGCTTCTTCTTCTTCTCACTCTTAGTGGGGGCAGCCTTGTAGCATATGCTGATGCTAGCTCAACCAATGTAGATAAGAAAAAGAAGGTGGTAGTGCTTGGAACTGGCTGGGCGGGAACAAGTTTCTTGAAGAATATTAAAGATCCCTCCTATGAGGTTCAAGTGATATCGCCTCGTAATTACTTTGCATTCACCCCATTATTGCCGAGTGTTACATGCGGTACAGTGGAAGCACGTAGCATTGTTGAACCGATCCGCAACATTGTGAGGAAGAAAGGGGTAGACATCAGATTCAATGAAGCGGAATGCTACAAGATTGATGCTGAAAATAGAAAACTCTATTGTCGTTCTAATGAAAGCAACAATCTGAATGGGAAAAAGGAATTTGTTGTGGACTACGACTACCTTGTGATTGCAGTGGGAGCACAAGTTAATACATTCAATACTCCTGGTGTTGTGGAGAATTGTCATTTCTTGAAGGAAGTGGAAGATGCTCAGAGAATTCGAAGAACTGTAATTGATTGCTTTGAGAGGGCAAGTCTGCCTACATTGAATGAAGAAGATAGAAAGAAAATTCTTCATTTTGCTATTGTTGGTGGTGGCCCAACTGGTGTGGAATTTGCAGCAGAACTTCATGATTTTGTTAACGAAGACTTGGTCAAATTATATCCTGGGCTCAATGATTTTGTAAAAATTACTCTTCTTGAGGCAGGAGATCATATCTTGAACATGTTTGACAAAAGAATTACAGCTTTTGCTGAAAATAAATTCCGTAGAGATGGTATTGATGTTAAAACTGGATCAATGGTAATCAAAGTTACTGATAAAGAGATCTCTACCAAGGAAATGAAGAATGGAGAAATATCTTCTGTGCCTTATGGAATGGCAGTATGGTCAACTGGTATTGGAACTCGTCCGATCATTAGGGATTTTATGTCACAGATTGGTCAGGCTAACAGACGTGCTTTAGCAACCGATGAATGGCTTCGAGTAGAGGGATGTGACAATGTATATGCACTTGGTGACTGCGCTACTATAAATCAGCGAAGAGTCATGGAAGATATTTCAGCAATTTTTAGCAAGGCCGATAGACACAATACTGGGACTCTTACAGTAAAAGAGTTTAAAGAAGTCATTGATGACATATGTGAAAGATATCCCCAAGTGGAGCTATATTTGAAGAACAAGCAGATGAACGAAATTGCTGATCTTTTGAGAGGATCGAAAGGGGATGTGGCAAAGGAGTCAATTGAATTAAAGATTGAAGAGTTTAAATCAGCTCTTTCTCAAGTTGATTCTCAAATGAAAAACCTTCCTGCTACAGCACAGGTGGCTGCGCAACAAGGTGCTTATCTTGCCCATTGTTTTAACCATATGGAGAATTGCGACGAAAATCCTGAAGGTCCTCTTAGGTATAGGGGATCAGGACGCCACCGTTTTCAGTCCTTTAGGTACAAACATCTTGGACAATTCGCACCATTGGGAGGTGAACAAACGGCTGCACAACTTCCTGGAGATTGGGTGTCCATTGGCCACAGCTCTCAGTGGCTCTGGTACTCTGTCTATGCAAGTAAGCAAGTTAGTTGGCGGACAAGAACACTGGTGGTTACGGATTGGACTAGGCGTTTCGTTTTCGGTAGAGATTCGAGTCGCATATGA 1722 41.58 MGMQGLYSTVSRLLQDHPSFSRLLLLLTLSGGSLVAYADASSTNVDKKKKVVVLGTGWAGTSFLKNIKDPSYEVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPIRNIVRKKGVDIRFNEAECYKIDAENRKLYCRSNESNNLNGKKEFVVDYDYLVIAVGAQVNTFNTPGVVENCHFLKEVEDAQRIRRTVIDCFERASLPTLNEEDRKKILHFAIVGGGPTGVEFAAELHDFVNEDLVKLYPGLNDFVKITLLEAGDHILNMFDKRITAFAENKFRRDGIDVKTGSMVIKVTDKEISTKEMKNGEISSVPYGMAVWSTGIGTRPIIRDFMSQIGQANRRALATDEWLRVEGCDNVYALGDCATINQRRVMEDISAIFSKADRHNTGTLTVKEFKEVIDDICERYPQVELYLKNKQMNEIADLLRGSKGDVAKESIELKIEEFKSALSQVDSQMKNLPATAQVAAQQGAYLAHCFNHMENCDENPEGPLRYRGSGRHRFQSFRYKHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRTRTLVVTDWTRRFVFGRDSSRI 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 36489020 36494854 + Sed0023335.1 Sed08g2309 724085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2309 573 SUPERFAMILY EF-hand 329 459 IPR011992 -
Sed08g2309 573 Pfam NDH2 C-terminal domain 508 569 IPR054585 -
Sed08g2309 573 SUPERFAMILY FAD/NAD(P)-binding domain 48 267 IPR036188 -
Sed08g2309 573 PANTHER NADH DEHYDROGENASE 39 573 IPR045024 GO:0003954(InterPro)|GO:0006116(InterPro)
Sed08g2309 573 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 417 572 - -
Sed08g2309 573 Pfam Pyridine nucleotide-disulphide oxidoreductase 49 372 IPR023753 GO:0016491(InterPro)
Sed08g2309 573 Gene3D - 39 417 - -
Sed08g2309 573 Gene3D - 418 572 - -
Sed08g2309 573 ProSiteProfiles EF-hand calcium-binding domain profile. 371 406 IPR002048 GO:0005509(InterPro)
Sed08g2309 573 PRINTS FAD-dependent pyridine nucleotide reductase signature 215 233 - -
Sed08g2309 573 PRINTS FAD-dependent pyridine nucleotide reductase signature 154 172 - -
Sed08g2309 573 PRINTS FAD-dependent pyridine nucleotide reductase signature 51 70 - -
Sed08g2309 573 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 39 400 - -
Sed08g2309 573 SUPERFAMILY FAD/NAD(P)-binding domain 215 368 IPR036188 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2056 Sed-Chr1:15396139 Sed08g2309 Sed-Chr8:36489020 7.80E-307 dispersed
Sed05g3116 Sed-Chr5:41306384 Sed08g2309 Sed-Chr8:36489020 6.70E-258 dispersed
Sed07g2160 Sed-Chr7:37168772 Sed08g2309 Sed-Chr8:36489020 1.00E-06 dispersed
Sed08g2309 Sed-Chr8:36489020 Sed14g0095 Sed-Chr14:1003980 3.40E-12 dispersed
Sed01g2055 Sed-Chr1:15395884 Sed08g2309 Sed-Chr8:36489020 7.80E-307 wgd
Sed14g1421 Sed-Chr14:22825667 Sed08g2309 Sed-Chr8:36489020 4.20E-65 wgd
Sed05g1975 Sed-Chr5:33046015 Sed08g2309 Sed-Chr8:36489020 3.10E-231 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2309 K03885 - csv:101204145 1052.35