Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2318 ATGGAACGAAGGGTCGTAATGACCGGCGCTCTTTACAGAGAAGTTCATACAATCACATCAACAAATTCCATTAAAGACCCTGCAACCATAACATCCAATTCCAGTTCCTTCGAACTCGGATTCTTCACACCGATTAACTCAACAAACCGATATGTCGGAATCTGGTTCAAGCAAATTTCCCCACAAACAGTGGTATGGGTTGCCAATCAAAACAGCCCTCTCAAAGACAATTCAGGAATCTTCAAAATTTCCCCAGATGGGAATCTTGTCGTTTTGGATCGAAACGACACCGTCCTCTGGTCTACAAACGTTTCTTCCTCGACAAGAAACACATCTGCCCGAATTCTTGATTCGGGAAATTTCATTTTGGAAGATCAATCTTCCAAAATGATTATATGGGAAAGTTTCAAGGACCCATCTGATAAACTCTTACCTTCCATGAAATTAATGACCAACACAAAAACAAAACAGAGTTTGGAACTTTCCTCGTGGAACAACCCTTCTACTCCATCTAAAGGAGCCTTCTCATTGAAGATTCATGTTTACAATCTCCCCGAAGCGGTTATTTTGAATGGCGATGGCGAAGGCGCGTATCGGTGGCGGTCGGGTCCATGGAATGGGCAGAATTTCATGGGAATCCCTGGAATGGATTCTACTTATCTCGATGGATATAAGCTCACAAGTGAAGATCAAAGTTACTATTTTTCGGTGGCTTATACAAGGACAAAACAATTCGGTTACTTGTCGTTGGATTCCGAAGGGAATGCGCAAGAAATGTATTTGGATGTGGAGGAGAAGCGTTGGATGGCTGGTTGGTCTGCTTTAAGAACAGAGTGTGATTACTATGGAGCTTGTGGGGCATTTGGGATTTGTAATGCTGAAGAATCCCCTGTTTGTAGGTGTTTGAGAGGGTTTAAGGCTAAGAATGAAGATGAATGGAATCAAGGGAAATGGAGTGGTGGGTGTGTGAGAGAGAAGCCATTGAAGTGCGAGAAGATGAACAATATTAGCAGTGAACAAGAAGATGGATTTTTGAAAGTGGAAATGGTTAAAGTTCCATTTTTTGCAGAGTGGTCTGAGGCGGATGCTTTTGCTTCCATTGATGATTGTAGAGTGATTTGCTTGAAGAATTGTTCGTGTAGTGGTTATGCATTTGATAGTGGTATTGGTTGTATGCTTTGGAATGGGGAGTTGATTGACGTACAAAAGTTCGAGGCTGATGGAGCTGATTTTTACCTTCGACTGGCTTATGCAGATTTGGATCATATAAAAGATGTAAAAGACCAGAAAGGACTTATTATAGCCGTAGTGCTACCAGTTACTTTTATCATCTTCAGCATTGTGACATATTTTTGGTGCAGATGGAAGAGTAGCAAACAAGAAAAGAACAAATCAGCTATGAGTTATAAGGTCTTAAAGATGAGAAGGGAGGATATGATTGAAGATGAAGTTAAATTGGAGGAGCTGCCTCTTTATGATTTTGACAAGTTGGCAATTGCAACAAACAACTTTGATATGAGTAACAAGTTAGGACAGGGAGGCTTTGGTCCAGTATATAAAGGAAAATTATTAAATGGACAGGAAATAGCAGTAAAGAGGCTTTCGAGAGTGTCTAATCAAGGGTATGAAGAATTTATAAATGAAGTGAGAGTTATTTCCAAACTACAACATAGGAATCTTGTGCAACTTTTTGGTTGCTGTGTGGAAGGAGATGAGAAGATGTTAATATATGAATACATGCCAAATCTAAGTTTGGATGCATTAATCTTTGGCTCCTTGAACCAAAAACTAATTTTGGATTGGCCAAAGAGATGCAATATCATTGATGGAATAGCTCGAGGTCTGCTTTACCTTCATCGAGATTCAAGAATGAGAATCATCCATAGAGATTTAAAGGCAAGTAATATTCTATTAGACAAAGATTTCAATCCTAAAATTTCAGATTTTGGGATAGCTAGGATTTTTGGTGGCAATGAAGTTCAAGCAAATACTTTAAGAGTTGTTGGGACTTATGGGTATATGTCTCCTGAGTATGCCATGCAAGGTCAATTTTCAGAGAAATCAGATGTGTACAGCTTTGGAGTTCTATTACTTGAAATTATAAGTGGGAAGCGAAATACAGGGTTCAACTTCCATGAAAAAGCGTTAAGTTTATTGGAATTTGCATGGAATTCATGGATGGAAAGCAATCTTATTCCTTTTATTGAACCAGCAATATATGAATTGGGCTATAAAACAGAGATAATGAGATGCATCCATGTGGGACTCTTATGTATTCAAGAATTTAGAAATGATCGACCAAATGTCTCTACCATTATCTCAATGATTAATAGTGAAATTGTGGATCTTCCTTCTCCAAAGCAACCTGGTTTTATTGGCAGACTAAATGAAAGTAACACAGAGTCATCAGAACAAAATTTAGATAAATTTTCTCTGAATAATGTTACACTTACAAAAATTATACCTCGGTAG 2472 38.43 MERRVVMTGALYREVHTITSTNSIKDPATITSNSSSFELGFFTPINSTNRYVGIWFKQISPQTVVWVANQNSPLKDNSGIFKISPDGNLVVLDRNDTVLWSTNVSSSTRNTSARILDSGNFILEDQSSKMIIWESFKDPSDKLLPSMKLMTNTKTKQSLELSSWNNPSTPSKGAFSLKIHVYNLPEAVILNGDGEGAYRWRSGPWNGQNFMGIPGMDSTYLDGYKLTSEDQSYYFSVAYTRTKQFGYLSLDSEGNAQEMYLDVEEKRWMAGWSALRTECDYYGACGAFGICNAEESPVCRCLRGFKAKNEDEWNQGKWSGGCVREKPLKCEKMNNISSEQEDGFLKVEMVKVPFFAEWSEADAFASIDDCRVICLKNCSCSGYAFDSGIGCMLWNGELIDVQKFEADGADFYLRLAYADLDHIKDVKDQKGLIIAVVLPVTFIIFSIVTYFWCRWKSSKQEKNKSAMSYKVLKMRREDMIEDEVKLEELPLYDFDKLAIATNNFDMSNKLGQGGFGPVYKGKLLNGQEIAVKRLSRVSNQGYEEFINEVRVISKLQHRNLVQLFGCCVEGDEKMLIYEYMPNLSLDALIFGSLNQKLILDWPKRCNIIDGIARGLLYLHRDSRMRIIHRDLKASNILLDKDFNPKISDFGIARIFGGNEVQANTLRVVGTYGYMSPEYAMQGQFSEKSDVYSFGVLLLEIISGKRNTGFNFHEKALSLLEFAWNSWMESNLIPFIEPAIYELGYKTEIMRCIHVGLLCIQEFRNDRPNVSTIISMINSEIVDLPSPKQPGFIGRLNESNTESSEQNLDKFSLNNVTLTKIIPR 823
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 36558153 36562648 - Sed0006889.1 Sed08g2318 724094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2318 823 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 468 579 - -
Sed08g2318 823 SUPERFAMILY Protein kinase-like (PK-like) 484 775 IPR011009 -
Sed08g2318 823 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 11 136 - -
Sed08g2318 823 Pfam PAN-like domain 338 401 IPR003609 -
Sed08g2318 823 Pfam S-locus glycoprotein domain 200 308 IPR000858 GO:0048544(InterPro)
Sed08g2318 823 SMART blect_4 21 139 IPR001480 -
Sed08g2318 823 Gene3D Transferase(Phosphotransferase) domain 1 580 783 - -
Sed08g2318 823 Gene3D Phosphorylase Kinase; domain 1 463 579 - -
Sed08g2318 823 Gene3D - 11 136 IPR036426 -
Sed08g2318 823 Pfam Protein tyrosine and serine/threonine kinase 506 735 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g2318 823 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 17 790 - -
Sed08g2318 823 SMART serkin_6 504 781 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g2318 823 Pfam D-mannose binding lectin 63 164 IPR001480 -
Sed08g2318 823 Pfam Domain of unknown function (DUF3403) 778 823 IPR021820 GO:0004674(InterPro)
Sed08g2318 823 CDD B_lectin 21 139 IPR001480 -
Sed08g2318 823 SMART ntp_6 339 415 IPR003609 -
Sed08g2318 823 ProSiteProfiles Protein kinase domain profile. 504 781 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g2318 823 ProSiteProfiles Bulb-type lectin domain profile. 15 136 IPR001480 -
Sed08g2318 823 SUPERFAMILY alpha-D-mannose-specific plant lectins 63 207 IPR036426 -
Sed08g2318 823 ProSitePatterns Serine/Threonine protein kinases active-site signature. 626 638 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g2318 823 PIRSF SRK 4 823 IPR024171 GO:0004674(InterPro)
Sed08g2318 823 CDD PAN_AP_plant 327 416 - -
Sed08g2318 823 ProSiteProfiles PAN/Apple domain profile. 330 416 IPR003609 -
Sed08g2318 823 CDD STKc_IRAK 510 777 - -
Sed08g2318 823 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 580 784 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2046 Sed-Chr1:15305645 Sed08g2318 Sed-Chr8:36558153 8.70E-299 dispersed
Sed01g2047 Sed-Chr1:15305645 Sed08g2318 Sed-Chr8:36558153 1.10E-235 dispersed
Sed01g2048 Sed-Chr1:15317650 Sed08g2318 Sed-Chr8:36558153 8.30E-308 dispersed
Sed08g2318 Sed-Chr8:36558153 Sed08g2320 Sed-Chr8:36568122 3.80E-291 dispersed
Sed08g2318 Sed-Chr8:36558153 Sed08g2319 Sed-Chr8:36564756 0.00E+00 tandem
Sed01g2040 Sed-Chr1:15263826 Sed08g2318 Sed-Chr8:36558153 1.00E-171 wgd
Sed14g1388 Sed-Chr14:22629481 Sed08g2318 Sed-Chr8:36558153 2.10E-183 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79687 PF07714 PK_Tyr_Ser-Thr 4.40E-45 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2318 - - - 0.0