Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2319 ATGACCAACACAAAAACAAAACAGAGTTTGGAACTTTCCTCGTGGAACAACCCTTCTACTCCATCTAAAGGAGCCTTCTCATTGAAGATTCATGTTTACAATCTCCCCGAAGCGGTTATTTTGAATGGCGATGGCGAAGGCGCGTATCGGTGGCGGTCGGGTCCATGGAATGGGCAGAATTTCATGGGAATCCCTGAAATGGATTCTACTTATCTCAATGGATATAAACTCACACGTGAAGATCAAAGTTACTATTTTTCGGTTTCTTATACAAAGGTGAAACTATTCGGTTACTTGTTGTTGAATTCGGAAGGGAATGCACAAGAAATGCAATTGGATGTGAAGGAGAAGAGTTCGATAGCTGGTTGGTCTGCTTTAAGAACAGAGTGTGATTACTATGGAGCTTGTGGGGCATTTGGGATTTGTAATGCTAAAAATTCCCCTGTTTGTAGGTGTTTGAGAGGGTTTAGCGCTAAGAATGAAGATGAATGGAATCAAGGGAAATGGAGTGGTGGGTGTGTGAGAGAGAAGCCATTGAAGTGCGAGAAGATGAACAATATTAGCGGTGAAGAAGAAGATGGATTTTTGAAAGTGGAAATGGTTAAAGTTCCATTTTTTGCAGAGTGGTCTGAGGCGGATGCTTTTGCTTCGATTGATGATTGTAGAGTGAATTGCTTGAAGAATTGTTCGTGTAGTGGTTATGCATTTGATAGTGGTATTGGTTGTATGCTTTGGAATGGGGAGTTGATTGATGTACAAAAGTTTGAGGCTGGTGGAGCTGATCTTTACCTTCGACTGGCTTATGCAGATTTGGATCATACAAAAGATGTTAAAAACCAAACAGGACTTATTATAGCCATAGTGCTACCAGTAACTTTTATCATCTTCAGCATGGCGACATATTTTTGGTGCAGATGGAAGACTAGCAAACAAGAAAAGAACAAATCAACTGTGAATTCTAAGGTCTTAAAGTTGAGAAGGGAGGATATGATTGAAGATGAAGTTAAATTGGAAGAGCTGCCTCTTTATGATTTTGACAAGTTGGCAATTGCAACAAACAACTTTGATATGAATAACAAGTTAGGACAGGGAGGCTTTGGTCCAGTATATAAAGGAAAATTATTAAATGGACAGGAAATAGCAGTAAAGAGGCTTTCAAGAGTGTCTAATCAAGGTTATGAAGAATTTATAAATGAAGTGAGAGTTATTTCCAAATTACAACATAGGAATCTTGTGCAACTTTTTGGTTGTTGTGTGGAAGGAGATGAGAAGATGCTAATTTATGAATACATGCCCAATCTAAGTTTGGATGCATTAATCTTTGGCTCCTTGAACCAAAAACTAATTTTGGATTGGCCAAAGAGATGCAATATCATTGATGGAATAGCTCGAGGTCTGCTTTACCTTCATCGAGATTCGAGAATGAGAATCATCCATAGAGATTTAAAGGCAAGTAATATTCTATTAGACAAAGACTTCAATCCTAAAATTTCAGATTTTGGAATGGCTAGGATTTTTGGTGGTAATGAAGTTCAAGCAAACACTTTAAGAGTTGTTGGGACTTATGGGTATATGTCTCCTGAGTACGCTATGCAAGGTCAATTTTCAGAGAAATCAGATGTGTTCAGCTTTGGAGTTCTATTACTTGAAATTATAAGTGGGAAGCGAAATACAGGGTTCAACTTCCATGAAAATGCGTTAAGTTTATTGGAATTTGCATGGAATTCATGGATGGAAGTCAATCTTATTCCTCTAATTGAACCAACAATATATGAATTGGGCTATAAAACAGAGATTATGAGATGCATCCATGTGGGACTCTTATGCATTCAAGAATTTAGAAATGATCGACCAAATGTCTCTACCATTATCTCAATGATTAATAGTGAAATTGTGGATCTTCCTTCTCCAAAGCAACCTGGCTTTATTGGCAGACTAAATGAAAGTAACACAGAGTCGTCAGAACAAAATTTAGATAAAATTTCTCTAAATAATGTTACACTTACAAAAATTATACCTCGGTAG 2025 37.43 MTNTKTKQSLELSSWNNPSTPSKGAFSLKIHVYNLPEAVILNGDGEGAYRWRSGPWNGQNFMGIPEMDSTYLNGYKLTREDQSYYFSVSYTKVKLFGYLLLNSEGNAQEMQLDVKEKSSIAGWSALRTECDYYGACGAFGICNAKNSPVCRCLRGFSAKNEDEWNQGKWSGGCVREKPLKCEKMNNISGEEEDGFLKVEMVKVPFFAEWSEADAFASIDDCRVNCLKNCSCSGYAFDSGIGCMLWNGELIDVQKFEAGGADLYLRLAYADLDHTKDVKNQTGLIIAIVLPVTFIIFSMATYFWCRWKTSKQEKNKSTVNSKVLKLRREDMIEDEVKLEELPLYDFDKLAIATNNFDMNNKLGQGGFGPVYKGKLLNGQEIAVKRLSRVSNQGYEEFINEVRVISKLQHRNLVQLFGCCVEGDEKMLIYEYMPNLSLDALIFGSLNQKLILDWPKRCNIIDGIARGLLYLHRDSRMRIIHRDLKASNILLDKDFNPKISDFGMARIFGGNEVQANTLRVVGTYGYMSPEYAMQGQFSEKSDVFSFGVLLLEIISGKRNTGFNFHENALSLLEFAWNSWMEVNLIPLIEPTIYELGYKTEIMRCIHVGLLCIQEFRNDRPNVSTIISMINSEIVDLPSPKQPGFIGRLNESNTESSEQNLDKISLNNVTLTKIIPR 674
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 36564756 36568065 - Sed0002513.1 Sed08g2319 724095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2319 674 ProSitePatterns Serine/Threonine protein kinases active-site signature. 477 489 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g2319 674 SMART serkin_6 355 632 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g2319 674 SMART ntp_6 190 266 IPR003609 -
Sed08g2319 674 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 431 635 - -
Sed08g2319 674 MobiDBLite consensus disorder prediction 1 21 - -
Sed08g2319 674 ProSiteProfiles Protein kinase domain profile. 355 632 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g2319 674 FunFam receptor-like serine/threonine-protein kinase SD1-8 328 430 - -
Sed08g2319 674 Pfam Domain of unknown function (DUF3403) 629 674 IPR021820 GO:0004674(InterPro)
Sed08g2319 674 CDD STKc_IRAK 361 628 - -
Sed08g2319 674 Pfam PAN-like domain 190 252 IPR003609 -
Sed08g2319 674 ProSiteProfiles PAN/Apple domain profile. 181 267 IPR003609 -
Sed08g2319 674 Pfam Protein tyrosine and serine/threonine kinase 357 557 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g2319 674 Gene3D Transferase(Phosphotransferase) domain 1 431 634 - -
Sed08g2319 674 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 3 641 - -
Sed08g2319 674 Pfam S-locus glycoprotein domain 51 159 IPR000858 GO:0048544(InterPro)
Sed08g2319 674 CDD PAN_AP_plant 178 267 - -
Sed08g2319 674 SUPERFAMILY Protein kinase-like (PK-like) 335 626 IPR011009 -
Sed08g2319 674 Gene3D Phosphorylase Kinase; domain 1 314 430 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2319 Sed-Chr8:36564756 Sed10g0345 Sed-Chr10:2118971 2.60E-152 dispersed
Sed08g2318 Sed-Chr8:36558153 Sed08g2319 Sed-Chr8:36564756 0.00E+00 tandem
Sed08g2319 Sed-Chr8:36564756 Sed08g2320 Sed-Chr8:36568122 5.70E-253 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79688 PF07714 PK_Tyr_Ser-Thr 3.30E-45 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2319 - - - 0.0