Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2320 ATGAATGGAAGCTTTTCAGGTACTGTTCTTCTCTTTCTTACATTTACATGCCTCTCTTCAAGATCAGGCTTAGCCAACGACACAATCACATCAACAGATTTCATCAAAAACCCTTCATCCAAAATCTCAAATTCAAGCACTTTCAAATTAGGCTTCTTTTCCCCTGTTCATTCCACAGCCCAATACGTAGGAATTTGGTTCAATCAAATTTCCACTCAAACCATAATATGGGTCGCCAACAAAAACAATCCTCTAATTAACAACAACAATTTCGCCATTTTCACTATTTCCAACGATGGAAATCTCGTACTCTTGGATGAAATCAACAACGCAATCCTCTGGTCTTCAAATGTAACCAATCCTCCCACGGTCAACACCACTGCCCGAATCCTTGATTCGGGCAACCTCATTTTACAAGATCCAGCCTCCAATTTAATCATATGGGAAAGTTTCAAAAACCCTTCTAATTTCTTCTTACCCTCAATGAAACTCATCACAAATTCAAGAACAAAAGAGAAGCTCAAATTCACTTCATGGAAATCCTCTTCAGACCCATCTCCAGGTAACTTTTCTTTATCATTGGATGTTATTAATATCCCCGAAGCTGTGATTTATAATAACGGCGACCTGTATTGGAGATCTGGGCCGTGGAACGGGCAGAGCTTAATCGGAATACCCGAAATGATCTCTGTTTATCGAATCGGGTTTAATCTCGCAATCGAGGACCAAATTTATTATTTCTCTATTGTTTATAATAACGACGATCAGTTTATTTACACCATGCGGCTAAACCCAGAAGGGAGTTTGGTGCAAGAGTATTGGAATTTTGGCGAAAAAAATTGGGTGGAAACTTGGTCGGCGTTTAGAACAGAGTGTGATTACTTTGGTGTTTGCGGGCCGTTTGGGATTTGCGATGGGAATTCGACTCGAATTTGCAATTGCTTAAAAGGGTTTAGGCCAAAGGATGAAAAGGAGTGGAATTTAGGGATTTGGAGAAATGGGTGTGTGAGAATTACGCCATTGAAGTGTGAGATTAGTAATGGAAGCGTTGGGGAAGATGGGTTTTTGAAAATGGAATTGGTCAAAGTTCCTTATTTGGCAGAGTGGTCGGTTTCTTCTACTTCGGGGGATGATTGTAGACGACAGTGTTTGGGGAATTGTTCGTGTAGAGGCTATGCGTATGAAAATGGTATTGGTTGTATGATATGGAGAAGGGATTTGGTTGATGTACAAAAGTTTCAGAGCCTTGGAGCTGATCTTTATGTTCGATTGGCAGATGCTGACTTAGTCTCATTCACGGATGGTGTGAAAAACAAGACAGGAATTATCATAGCCATAGTGCTACCAGTAACGCTTATTATCTTCATGATTGCCATTTTCTTCTGGTGGAGATGGAAGGCTCGAAAACAAGATGAGTATTACAAAAAAGGAAAAAAGTTGAAGTTGAAAAGGAATGACACAATTGGGGACAAAATTAATTTTGAAGAACTACCACTTTATGGTTTTGAAAAGCTAGCAATTGCAACAAACAATTTTGATTTACGTAATAAACTTGGACAAGGTGGCTTTGGTCCCGTGTATAAGGGGACATTGATCGATGAACAAGAAATAGCAATAAAGAGGCTTTCAAGAGCTTCTAATCAAGGATCTGAAGAGTTTATAAATGAAGTGATTGTGATTTCAAAACTTCAACATAGAAATCTTGTGCAGCTTCTTGGTTGCTGCATTGAAAGAGAAGAGAAAATGCTAATATATGAGTATATGCCCAACCTAAGTTTGGATGCTTTCATCTTTGATTCTTCCAAACAAAAACTTCTCGATTGGAAAAAAAGATTCAATATTATTGATGGGATTGCTCGCGGTCTCCTTTACCTTCATAGAGATTCGAGATTGAAAATCATTCATAGAGACTTGAAGGCTAGCAATATTCTATTAGATAAAGATATGAATCCTAAAATTTCCGACTTTGGTATGGCAAGAATTTTCGGTGGCAACGAAGTGCAAGCCAATACTTTAAGGGTCGTTGGAACTTATGGATATATGTCACCTGAATATGCAATGCAAGGTCAATTTTCAGAGAAATCAGACGTTTTTAGTTTTGGAGTCTTATTACTTGAGATTATAAGTGGAAGAAAGAACACGGGGTTTCATCATCATGAACATTCCTTAAGCTTACTCGAATTTGCATGGAAGTTGTGGATGGAAGACAATCTTATTGGTTTGATTGATGAAACTATATATGAATTGTGTTATCAATCAGAGATTATGAGGTGCATCCAAGTGGGATTATTGTGTGTTGAAGAATGCATAGATGATAGGCCAAGTGTTTTCACCATTATTTCAATGCTCAACAGTGAAATTGTAGATCTTCCTATTCCAAAGCAGCCTAGCTTTATTAGTAGACCAGCTCATAAAACACATCTGCCCGAATTCTTGATTCGGGCAATTTCATTTTGGAAGATCAATCTTCCAAAATGA 2478 38.1 MNGSFSGTVLLFLTFTCLSSRSGLANDTITSTDFIKNPSSKISNSSTFKLGFFSPVHSTAQYVGIWFNQISTQTIIWVANKNNPLINNNNFAIFTISNDGNLVLLDEINNAILWSSNVTNPPTVNTTARILDSGNLILQDPASNLIIWESFKNPSNFFLPSMKLITNSRTKEKLKFTSWKSSSDPSPGNFSLSLDVINIPEAVIYNNGDLYWRSGPWNGQSLIGIPEMISVYRIGFNLAIEDQIYYFSIVYNNDDQFIYTMRLNPEGSLVQEYWNFGEKNWVETWSAFRTECDYFGVCGPFGICDGNSTRICNCLKGFRPKDEKEWNLGIWRNGCVRITPLKCEISNGSVGEDGFLKMELVKVPYLAEWSVSSTSGDDCRRQCLGNCSCRGYAYENGIGCMIWRRDLVDVQKFQSLGADLYVRLADADLVSFTDGVKNKTGIIIAIVLPVTLIIFMIAIFFWWRWKARKQDEYYKKGKKLKLKRNDTIGDKINFEELPLYGFEKLAIATNNFDLRNKLGQGGFGPVYKGTLIDEQEIAIKRLSRASNQGSEEFINEVIVISKLQHRNLVQLLGCCIEREEKMLIYEYMPNLSLDAFIFDSSKQKLLDWKKRFNIIDGIARGLLYLHRDSRLKIIHRDLKASNILLDKDMNPKISDFGMARIFGGNEVQANTLRVVGTYGYMSPEYAMQGQFSEKSDVFSFGVLLLEIISGRKNTGFHHHEHSLSLLEFAWKLWMEDNLIGLIDETIYELCYQSEIMRCIQVGLLCVEECIDDRPSVFTIISMLNSEIVDLPIPKQPSFISRPAHKTHLPEFLIRAISFWKINLPK 825
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 36568122 36573515 - Sed0024452.1 Sed08g2320 724096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2320 825 ProSitePatterns Serine/Threonine protein kinases active-site signature. 633 645 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g2320 825 Gene3D Phosphorylase Kinase; domain 1 488 587 - -
Sed08g2320 825 Pfam D-mannose binding lectin 74 180 IPR001480 -
Sed08g2320 825 SUPERFAMILY Protein kinase-like (PK-like) 498 813 IPR011009 -
Sed08g2320 825 Gene3D Transferase(Phosphotransferase) domain 1 588 789 - -
Sed08g2320 825 SMART serkin_6 512 788 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g2320 825 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 18 796 - -
Sed08g2320 825 SMART blect_4 32 154 IPR001480 -
Sed08g2320 825 ProSiteProfiles Bulb-type lectin domain profile. 26 151 IPR001480 -
Sed08g2320 825 SMART ntp_6 350 424 IPR003609 -
Sed08g2320 825 SUPERFAMILY alpha-D-mannose-specific plant lectins 61 218 IPR036426 -
Sed08g2320 825 Pfam S-locus glycoprotein domain 212 321 IPR000858 GO:0048544(InterPro)
Sed08g2320 825 CDD STKc_IRAK 518 784 - -
Sed08g2320 825 ProSiteProfiles Protein kinase domain profile. 512 788 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g2320 825 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 588 791 - -
Sed08g2320 825 CDD PAN_AP_plant 339 425 - -
Sed08g2320 825 CDD B_lectin 43 154 IPR001480 -
Sed08g2320 825 Pfam PAN-like domain 350 410 IPR003609 -
Sed08g2320 825 Gene3D - 22 152 IPR036426 -
Sed08g2320 825 Pfam Protein tyrosine and serine/threonine kinase 514 718 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g2320 825 ProSiteProfiles PAN/Apple domain profile. 343 425 IPR003609 -
Sed08g2320 825 PIRSF SRK 3 811 IPR024171 GO:0004674(InterPro)
Sed08g2320 825 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 476 587 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2318 Sed-Chr8:36558153 Sed08g2320 Sed-Chr8:36568122 3.80E-291 dispersed
Sed08g2320 Sed-Chr8:36568122 Sed14g1388 Sed-Chr14:22629481 5.80E-191 dispersed
Sed08g2319 Sed-Chr8:36564756 Sed08g2320 Sed-Chr8:36568122 5.70E-253 tandem
Sed14g1371 Sed-Chr14:22495961 Sed08g2320 Sed-Chr8:36568122 7.00E-65 wgd
Sed04g3315 Sed-Chr4:43407511 Sed08g2320 Sed-Chr8:36568122 1.20E-15 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79689 PF07714 PK_Tyr_Ser-Thr 2.50E-48 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2320 - - - 0.0