Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2337 ATGTTCAATTTTAAGATTTTCATGATCTTTGTCCTTAATTTGATCATCCGTGGATACGCGCTGACTCGTAATCGTTGCTACAGCACCAATTTCACAACGAATAGTACCTTCGAGTCCAGTCTCAATACTCTCTTATCAAGTCTCTCCGCCAACGCCCCTGGAGCCAATGGATTCTTCAACTCCGCCGCAGGCGGTACACTGGACGACACCGTGTATGGCCTCTTCCAGTGTCGAGGAGACACCGTCAACACCTCCTGCAAAAACTGCGTATTGGAGGCTACCAGAAACGTCCTAACCCCTCAATTCTGTCCCTTTAGCAAAGGCGCCGTGGTGTGGTACGACGACTGCTTGTTGCGTTATTCCGACCAATATTTCTTTTCATTTGTGTCCACTGAGCCTAGTGACGACTTGAATAATCCCCGTCAAATTGGCGACATGGCTCGGTTCGACCAATTGGTAATGTCGACGTTGACAAGCGTAGCGGGTAAGGCCTCGAATGAAATAAAGTACTTTGCGACGGAGGAGGCAACTTTCACAACGAATACATTGGCTCAGTGCACCATGGATTTGTTGAATTCGGATTGCCAAGATTGTTTGACACTAGCCATTAGTGGCATTCCTGGATGTTGCAAAAACGATATTGGTGGTAGAGTTTTGTTTCCGAGCTGTTTTGTTCGTTTCGAAATTTATTCGTTTTACGGATCAAATATAATTTCGGATACACCTCCTGCAATTCAACTACCACCACCTCCTCCTTCTTCTTCAGGGGAAAGCAGATCATCCACGATGATAATTATAGCCATTGTTGTTCCAGTTACTGCCTTCATTCTGCTTTTGGTTCTTTGCTTGAGTTTCCTGCTCTGGAAAGAAAAGAAGAAAAACACTACGGTTAAGGAATACAGTGAATACAGTGGTATATATATACATATATTTATTGATGAGATCACCACAGTTGAATCATTGCAATTTGATTTCTATACAATTGATGCTGCTACTAACAATTTCTCAGAGGAAAATAGATTGGGTGAAGGTGGTTTTGGTGTAGTCTACAAGGGTATGCTTGAAAATGGACAAGAATTAGCTGTGAAAAGATTATCAAAAGGATCTTCACAAGGTTCTGAAGAGTTCAAGAATGAGGTCATGTTGGTTGCTAAGCTTCAACATAGAAATTTAGTAAGGTTATTGGGATTCTGCTTGGAGGGTGGAGAAAAGATACTCATCTATGAATATATTCCCAATAAAAGCCTTGACTACTTCCTATTTGATACCGAGAGACAGAAAACGGTAGATTGGTTGAGTCGATATAAGATCATTAATGGAATTGCCCGAGGAATGGTATATTTGCATGAAGATTCTCGACTTCGAATTATTCATCGCGATCTTAAAGCTAGCAATATTTTGTTAGATAGGGAAATGAATGCAAAGATTTCTGACTTTGGTATGGCACGCATTATACAAATGGATGAAACTCAAAGAAATACACGTCGGATTGTTGGAACCTAG 1503 41.32 MFNFKIFMIFVLNLIIRGYALTRNRCYSTNFTTNSTFESSLNTLLSSLSANAPGANGFFNSAAGGTLDDTVYGLFQCRGDTVNTSCKNCVLEATRNVLTPQFCPFSKGAVVWYDDCLLRYSDQYFFSFVSTEPSDDLNNPRQIGDMARFDQLVMSTLTSVAGKASNEIKYFATEEATFTTNTLAQCTMDLLNSDCQDCLTLAISGIPGCCKNDIGGRVLFPSCFVRFEIYSFYGSNIISDTPPAIQLPPPPPSSSGESRSSTMIIIAIVVPVTAFILLLVLCLSFLLWKEKKKNTTVKEYSEYSGIYIHIFIDEITTVESLQFDFYTIDAATNNFSEENRLGEGGFGVVYKGMLENGQELAVKRLSKGSSQGSEEFKNEVMLVAKLQHRNLVRLLGFCLEGGEKILIYEYIPNKSLDYFLFDTERQKTVDWLSRYKIINGIARGMVYLHEDSRLRIIHRDLKASNILLDREMNAKISDFGMARIIQMDETQRNTRRIVGT 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 36729486 36732850 + Sed0004080.2 Sed08g2337 724113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2337 500 Gene3D Phosphorylase Kinase; domain 1 306 410 - -
Sed08g2337 500 ProSitePatterns Protein kinases ATP-binding region signature. 341 363 IPR017441 GO:0005524(InterPro)
Sed08g2337 500 SUPERFAMILY Protein kinase-like (PK-like) 306 500 IPR011009 -
Sed08g2337 500 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 144 500 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Sed08g2337 500 FunFam Cysteine-rich receptor-like protein kinase 28 22 124 - -
Sed08g2337 500 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 411 500 - -
Sed08g2337 500 ProSitePatterns Serine/Threonine protein kinases active-site signature. 456 468 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g2337 500 FunFam Cysteine-rich receptor-like protein kinase 10 292 410 - -
Sed08g2337 500 Gene3D - 134 232 IPR038408 -
Sed08g2337 500 Gene3D - 19 125 IPR038408 -
Sed08g2337 500 Pfam Protein tyrosine and serine/threonine kinase 338 493 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g2337 500 ProSiteProfiles Gnk2-homologous domain profile. 19 125 IPR002902 -
Sed08g2337 500 ProSiteProfiles Gnk2-homologous domain profile. 131 232 IPR002902 -
Sed08g2337 500 Gene3D Transferase(Phosphotransferase) domain 1 411 500 - -
Sed08g2337 500 ProSiteProfiles Protein kinase domain profile. 335 500 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g2337 500 SMART serkin_6 335 497 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g2337 500 Pfam Salt stress response/antifungal 146 229 IPR002902 -
Sed08g2337 500 Pfam Salt stress response/antifungal 26 123 IPR002902 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2337 Sed-Chr8:36729486 Sed08g2340 Sed-Chr8:36741485 2.30E-126 dispersed
Sed08g2336 Sed-Chr8:36723894 Sed08g2337 Sed-Chr8:36729486 1.10E-181 tandem
Sed08g2337 Sed-Chr8:36729486 Sed08g2338 Sed-Chr8:36729535 4.50E-255 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79692 PF07714 PK_Tyr_Ser-Thr 1.80E-35 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2337 - - - 0.0