Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2338 ATGTTCAATTTTAAGATTTTCATGATCTTTGTCCTTAATTTGATCATCCGTGGATACGCGCTGACTCGTAATCGTTGCTACAGCACCAATTTCACAACGAATAGTACCTTCGAGTCCAGTCTCAATACTCTCTTATCAAGTCTCTCCGCCAACGCCCCTGGAGCCAATGGATTCTTCAACTCCGCCGCAGGCGGTACACTGGACGACACCGTGTATGGCCTCTTCCAGTGTCGAGGAGACACCGTCAACACCTCCTGCAAAAACTGCGTATTGGAGGCTACCAGAAACGTCCTAACCCCTCAATTCTGTCCCTTTAGCAAAGGCGCCGTGGTGTGGTACGACGACTGCTTGTTGCGTTATTCCGACCAATATTTCTTTTCATTTGTGTCCACTGAGCCTAGTGACGACTTGAATAATCCCCGTCAAATTGGCGACATGGCTCGGTTCGACCAATTGGTAATGTCGACGTTGACAAGCGTAGCGGGTAAGGCCTCGAATGAAATAAAGTACTTTGCGACGGAGGAGGCAACTTTCACAACGAATACATTGGCTCAGTGCACCATGGATTTGTTGAATTCGGATTGCCAAGATTGTTTGACACTAGCCATTAGTGGCATTCCTGGATGTTGCAAAAACGATATTGGTGGTAGAGTTTTGTTTCCGAGCTGTTTTGTTCGTTTCGAAATTTATTCGTTTTACGGATCAAATATAATTTCGGATACACCTCCTGCAATTCAACTACCACCACCTCCTCCTTCTTCTTCAGGGGAAAGCAGATCATCCACGATGATAATTATAGCCATTGTTGTTCCAGTTACTGCCTTCATTCTGCTTTTGGTTCTTTGCTTGAGTTTCCTGCTCTGGAAAGAAAAGAAGAAAAACACTACGGTTAAGGAATACAGTGAATACAGTGTTATTGATGAGATCACCACAGTTGAATCATTGCAATTTGATTTCTATACAATTGATGCTGCTACTAACAATTTCTCAGAGGAAAATAGATTGGGTGAAGGTGGTTTTGGTGTAGTCTACAAGGGTATGCTTGAAAATGGACAAGAATTAGCTGTGAAAAGATTATCAAAAGGATCTTCACAAGGTTCTGAAGAGTTCAAGAATGAGGTCATGTTGGTTGCTAAGCTTCAACATAGAAATTTAGTAAGGTTATTGGGATTCTGCTTGGAGGGTGGAGAAAAGATACTCATCTATGAATATATTCCCAATAAAAGCCTTGACTACTTCCTATTTGATACCGAGAGACAGAAAACGGTAGATTGGTTGAGTCGATATAAGATCATTAATGGAATTGCCCGAGGAATGGTATATTTGCATGAAGATTCTCGACTTCGAATTATTCATCGCGATCTTAAAGCTAGCAATATTTTGTTAGATAGGGAAATGAATGCAAAGATTTCTGACTTTGGTATGGCACGCATTATACAAATGGATGAAACTCAAAGAAATACACGTCGGATTGTTGGAACCTACGGTTACATGCCTCCAGAATATATAAAGCATGGAAACTTCTCCACAAAATCAGATGTATACAGTTTTGGAGTCTTGATGTTGGAAATTATAAGTGGAAAGAAAAATAGCACATTTTATCTATCTGGTTTCGCGGAAGACATCTTGACCTATGCTTGGCAACTATGGAAAGATGGAGAACCATTAGAATTATTGGACTTGAGTTTGAGAGACAGTTACTCAAGAAATATGGTGCTTAGATGCATCCATATTGGCTTACTTTGTGTACAAGAGGATCCTGGAGGAAGACCCTCCATGGCATCCATTGTTCTTATGTTGAATAGCTGTTCCTTTACTTTACCTCAACCTAAAGAGCCTGCATTCTTCATGCATAGTAAAGATAATGGCATTGTGAACGATGGCAATGAGTCTACAAATAAATCTGTCAATACAACATCTATGAGTGAGTTACATCCACGATAA 1944 40.74 MFNFKIFMIFVLNLIIRGYALTRNRCYSTNFTTNSTFESSLNTLLSSLSANAPGANGFFNSAAGGTLDDTVYGLFQCRGDTVNTSCKNCVLEATRNVLTPQFCPFSKGAVVWYDDCLLRYSDQYFFSFVSTEPSDDLNNPRQIGDMARFDQLVMSTLTSVAGKASNEIKYFATEEATFTTNTLAQCTMDLLNSDCQDCLTLAISGIPGCCKNDIGGRVLFPSCFVRFEIYSFYGSNIISDTPPAIQLPPPPPSSSGESRSSTMIIIAIVVPVTAFILLLVLCLSFLLWKEKKKNTTVKEYSEYSVIDEITTVESLQFDFYTIDAATNNFSEENRLGEGGFGVVYKGMLENGQELAVKRLSKGSSQGSEEFKNEVMLVAKLQHRNLVRLLGFCLEGGEKILIYEYIPNKSLDYFLFDTERQKTVDWLSRYKIINGIARGMVYLHEDSRLRIIHRDLKASNILLDREMNAKISDFGMARIIQMDETQRNTRRIVGTYGYMPPEYIKHGNFSTKSDVYSFGVLMLEIISGKKNSTFYLSGFAEDILTYAWQLWKDGEPLELLDLSLRDSYSRNMVLRCIHIGLLCVQEDPGGRPSMASIVLMLNSCSFTLPQPKEPAFFMHSKDNGIVNDGNESTNKSVNTTSMSELHPR 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 36729535 36734020 + Sed0004080.1 Sed08g2338 724114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2338 647 ProSiteProfiles Protein kinase domain profile. 329 615 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g2338 647 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 144 616 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Sed08g2338 647 Pfam Domain of unknown function (DUF3403) 606 647 IPR021820 GO:0004674(InterPro)
Sed08g2338 647 ProSitePatterns Protein kinases ATP-binding region signature. 335 357 IPR017441 GO:0005524(InterPro)
Sed08g2338 647 SUPERFAMILY Protein kinase-like (PK-like) 314 623 IPR011009 -
Sed08g2338 647 Pfam Salt stress response/antifungal 26 123 IPR002902 -
Sed08g2338 647 Pfam Salt stress response/antifungal 146 229 IPR002902 -
Sed08g2338 647 Gene3D Transferase(Phosphotransferase) domain 1 405 611 - -
Sed08g2338 647 FunFam cysteine-rich receptor-like protein kinase 10 405 607 - -
Sed08g2338 647 ProSiteProfiles Gnk2-homologous domain profile. 19 125 IPR002902 -
Sed08g2338 647 FunFam Cysteine-rich receptor-like protein kinase 10 289 404 - -
Sed08g2338 647 Gene3D - 134 232 IPR038408 -
Sed08g2338 647 Gene3D - 19 125 IPR038408 -
Sed08g2338 647 Pfam Protein tyrosine and serine/threonine kinase 332 598 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g2338 647 Gene3D Phosphorylase Kinase; domain 1 289 404 - -
Sed08g2338 647 MobiDBLite consensus disorder prediction 625 647 - -
Sed08g2338 647 ProSitePatterns Serine/Threonine protein kinases active-site signature. 450 462 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g2338 647 ProSiteProfiles Gnk2-homologous domain profile. 131 232 IPR002902 -
Sed08g2338 647 SMART serkin_6 329 581 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g2338 647 FunFam Cysteine-rich receptor-like protein kinase 28 22 124 - -
Sed08g2338 647 CDD STKc_IRAK 335 601 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2336 Sed-Chr8:36723894 Sed08g2338 Sed-Chr8:36729535 6.50E-254 dispersed
Sed08g2338 Sed-Chr8:36729535 Sed08g2340 Sed-Chr8:36741485 5.20E-187 dispersed
Sed08g2337 Sed-Chr8:36729486 Sed08g2338 Sed-Chr8:36729535 4.50E-255 tandem
Sed08g2338 Sed-Chr8:36729535 Sed08g2339 Sed-Chr8:36736094 4.70E-85 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79693 PF07714 PK_Tyr_Ser-Thr 2.00E-52 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2338 - - - 0.0