Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2365 ATGGGTTCCCAAACACTGGTTTTCTTCATCTTGGTTTCCTTTTTGGTTGCTGCTACAGCACAGGATGAAGAACCCAACAATGGGCTTGTCATGAACTTTTACAAAGATTCATGTCCCCAAGCTGAAGATATCATCAAAGAACAGGTCAGGCTTCTGTACAAGCGCCACAAGAACACTGCATTCTCTTGGCTCAGAAACATCTTCCATGATTGTGCTGTTCAATCCTGTGATGCTTCTCTGCTTTTGGATTCAACAAGGAGGACTCTGTCTGAGAAGGAAACAGATAGGAGCTTTGGACTGAGAAATTTTAGGTATATTGAGACCATTAAAGAGGCTTTGGAGAGGGAGTGCCCTGGAGTTGTGTCCTGTGCTGATATTCTTGTTTTGTCTGCAAGAGATGGGATTGTTTCGCTTGGAGGGCCTTACATCCCACTTAAGACTGGTAGAAGAGATGGGAGGAGAAGCAGAGCTGAAATTTTGGAAGAGTACCTTCCAGACCATAATGAGAGCATGTCTGTTGTTCTTGAAAGATTTTCAGCCATGGGTATTGATACCCCTGGTGTGGTTGCTTTACTAGGAGCTCATAGTGTTGGTAGAACACACTGTGTGAAGTTAGTACACCGGCTGTACCCACAGGTAGACCCAGCTCTAAACCCTGGCCATGTAGAGCACATGTTATACAAGTGTCCCGACGAGATCCCAGACCCCAAGGCCGTACAGTATGTGAGGAACGACCGTGGTACGCCCATGATCCTCGACAACAACTACTACAGAAACATTCTTGACAACAAAGGGTTGCTGATAGTGGATCACCAACTGGCCACAGACAAGAGAACAAAGCCATTTGTGAAGAAAATGGCAAAAAAGCAAGACTATTTCTTCAAGGAATTCTCAAGAGCCATTGCCATTCTTTCTGAAAACAACCCTCTCACTGGCTCAAAGGGTGAGATCAGAAAGCAGTGCAATGTTGCCAACAAGCTGCACTGA 987 45.29 MGSQTLVFFILVSFLVAATAQDEEPNNGLVMNFYKDSCPQAEDIIKEQVRLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRRTLSEKETDRSFGLRNFRYIETIKEALERECPGVVSCADILVLSARDGIVSLGGPYIPLKTGRRDGRRSRAEILEEYLPDHNESMSVVLERFSAMGIDTPGVVALLGAHSVGRTHCVKLVHRLYPQVDPALNPGHVEHMLYKCPDEIPDPKAVQYVRNDRGTPMILDNNYYRNILDNKGLLIVDHQLATDKRTKPFVKKMAKKQDYFFKEFSRAIAILSENNPLTGSKGEIRKQCNVANKLH 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 36911627 36914266 - Sed0020263.1 Sed08g2365 724141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2365 328 SUPERFAMILY Heme-dependent peroxidases 29 325 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g2365 328 ProSiteProfiles Plant heme peroxidase family profile. 28 325 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g2365 328 PRINTS Haem peroxidase superfamily signature 121 138 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g2365 328 PRINTS Haem peroxidase superfamily signature 60 74 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g2365 328 PRINTS Haem peroxidase superfamily signature 139 151 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g2365 328 PRINTS Haem peroxidase superfamily signature 245 260 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g2365 328 PRINTS Haem peroxidase superfamily signature 187 202 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g2365 328 Gene3D Peroxidase, domain 2 165 304 - -
Sed08g2365 328 PRINTS Plant peroxidase signature 139 154 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g2365 328 PRINTS Plant peroxidase signature 259 276 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g2365 328 PRINTS Plant peroxidase signature 62 82 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g2365 328 PRINTS Plant peroxidase signature 243 258 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g2365 328 PRINTS Plant peroxidase signature 299 312 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g2365 328 PRINTS Plant peroxidase signature 101 114 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g2365 328 PRINTS Plant peroxidase signature 120 130 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g2365 328 PRINTS Plant peroxidase signature 186 198 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g2365 328 PRINTS Plant peroxidase signature 38 57 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g2365 328 PANTHER - 12 324 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g2365 328 Gene3D - 32 325 - -
Sed08g2365 328 FunFam Peroxidase 165 304 - -
Sed08g2365 328 CDD secretory_peroxidase 28 323 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Sed08g2365 328 FunFam Peroxidase 32 173 - -
Sed08g2365 328 Pfam Peroxidase 46 288 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1997 Sed-Chr3:13867420 Sed08g2365 Sed-Chr8:36911627 5.50E-100 dispersed
Sed04g1342 Sed-Chr4:27745121 Sed08g2365 Sed-Chr8:36911627 9.80E-102 dispersed
Sed08g2365 Sed-Chr8:36911627 Sed07g1667 Sed-Chr7:14402524 1.70E-53 dispersed
Sed01g1475 Sed-Chr1:10784384 Sed08g2365 Sed-Chr8:36911627 6.60E-178 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2365 K00430 - csv:101214168 609.757