Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2407 ATGCTTTCCAGAGTTGGCAATGCCTTTTGGATTCAGAATCAAGATGATGAACAACACCCAACTTCCTGGACTCAAAACAACAACCACTCTGTTCACTGCTCTGTTTTGGACAACAACAATGGCGGCGATATTACCTCCCTCTCTACCTTTAAATCCATGCTCGAGGTTGAAGACGACTGGTCCATCACTCCCAATGATATCAATTCCATTACCTTCAACCATGATTTCACAGACCCACATCACAATTTGTTGCTTCTCCCTCCAGATTCATCCTGTTCTTCTTCCTCTGTTTTCAACAACATCAACGACATCGACCCATCTCAGTTGCGGTTCTTATTTCCCCCAACACACACTTTCTCTTCACTTTCCAAGGTCATTGGTAACAACCCTTTAGAGCATAGCTTTGATTTTGGGGCGGAGGTTGGGTTTCTTGACGCCCAAGCTTCCAATGCTTCGGCTCTGCTCAACAATGGGGGTGGATTAGGGTTACTAACTGGGTTTACTGATTTAGGCTCAACTTGTCAGATGAACAGCTCTAATTTGTGCTTGGACTCTCAATTGACAGAGAATTATTCGGGTTTTGCGGGATTTCGCAGTTTCGACGAGAATTTGGGGAATGCTCGGGCTAAGGTTTTGAGACCACTTGAATCCTTCCCCTCAGTGGGAGCTCAGCCTACACTTTTTCAGAAAAGGGCAGCTCTAAGGAAGAATTTGGCTGATATTGGAAAAAATGAAGTGGGTGATGAAAATGGGAAGAAGAGGAAGATGATCCATGCAGATGAGTTGCAAGATACTAGCATTGACACATCTTGTTTCAATTATGATTCTGATGACTTTACTGAGAATAATAACACTATGTTTGATGAGAGTGGTAGAAATGTTGGGAATACTTCCAATGGTAATAGTACAGTGACCGGCGGCGACCGGAAGGGGAAGAAGAAAGGACTTCCGGCGAAGAATTTGATGGCCGAGAGGCGCCGGAGGAAGAAGCTCAATGATAGACTCTACATGCTGCGGTCTGTTGTTCCCAACATCAGCAAAATGGATAGGGCTTCAATTCTTGGGGATGCAATTGAATACTTGAAGGAACTACTACAAAGAATCAATGACCTTCATAGTGAACTAGAATTTTCTCCTTCTGGGACGGCATTGACGCCGAGCACGACCTTTCGCCCCCCGACTCCAACTGCGCCGAGCCTCTCGAGTCGTATAAAGGAGGAGCTTTGTCCTAGCTCATTTCCCAGCCCTAATGGCCGACCTGCAAGGGTCGAAGTTCGGGTACGAGAAGGACGGGCAGTCAATATACACATGTTCTGTGGTCGTCGACCTGGTCTCTTGCTCTCCACAGTTCGGGCATTAGATGATCTTGGATTAGACATCCAGCAAGCTGTGATTAGTTGCTTTAATGGTTTTGCTATGGACATTTTCCGAGCAGAGCAATGCAGTGAAGGCCAGGATGTCCATCCAGAGCAGATAAAAGCAATACTATTGGATTCAGTTGGTTTCAATGGTGCAACTTAG 1521 45.63 MLSRVGNAFWIQNQDDEQHPTSWTQNNNHSVHCSVLDNNNGGDITSLSTFKSMLEVEDDWSITPNDINSITFNHDFTDPHHNLLLLPPDSSCSSSSVFNNINDIDPSQLRFLFPPTHTFSSLSKVIGNNPLEHSFDFGAEVGFLDAQASNASALLNNGGGLGLLTGFTDLGSTCQMNSSNLCLDSQLTENYSGFAGFRSFDENLGNARAKVLRPLESFPSVGAQPTLFQKRAALRKNLADIGKNEVGDENGKKRKMIHADELQDTSIDTSCFNYDSDDFTENNNTMFDESGRNVGNTSNGNSTVTGGDRKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPNISKMDRASILGDAIEYLKELLQRINDLHSELEFSPSGTALTPSTTFRPPTPTAPSLSSRIKEELCPSSFPSPNGRPARVEVRVREGRAVNIHMFCGRRPGLLLSTVRALDDLGLDIQQAVISCFNGFAMDIFRAEQCSEGQDVHPEQIKAILLDSVGFNGAT 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 37177970 37181537 - Sed0018212.1 Sed08g2407 724183

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2407 506 Pfam Helix-loop-helix DNA-binding domain 322 364 IPR011598 GO:0046983(InterPro)
Sed08g2407 506 CDD bHLH_AtAMS_like 318 381 - -
Sed08g2407 506 CDD ACT_UUR-ACR-like 435 495 - -
Sed08g2407 506 MobiDBLite consensus disorder prediction 288 306 - -
Sed08g2407 506 FunFam BHLH transcription factor 311 379 - -
Sed08g2407 506 Gene3D - 309 378 IPR036638 GO:0046983(InterPro)
Sed08g2407 506 MobiDBLite consensus disorder prediction 379 402 - -
Sed08g2407 506 SMART finulus 321 370 IPR011598 GO:0046983(InterPro)
Sed08g2407 506 MobiDBLite consensus disorder prediction 288 315 - -
Sed08g2407 506 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 318 383 IPR036638 GO:0046983(InterPro)
Sed08g2407 506 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 315 364 IPR011598 GO:0046983(InterPro)
Sed08g2407 506 Pfam Plant bHLH transcription factor, ACT-like domain 423 495 IPR054502 -
Sed08g2407 506 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 273 501 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2407 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0409 Sed-Chr6:3616331 Sed08g2407 Sed-Chr8:37177970 1.30E-105 dispersed
Sed08g2407 Sed-Chr8:37177970 Sed14g1019 Sed-Chr14:19770612 1.30E-31 dispersed
Sed01g1539 Sed-Chr1:11119654 Sed08g2407 Sed-Chr8:37177970 4.50E-212 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g28 . Blo16g00289 . . . . Bma06g00283 . . Cmo18g00238 . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00527 Csa01g00990 Chy12g01144 Cme12g01562 . . Bda11g01575 . . . . . Sed08g2407 . . . Cma18g00292 Car13g00673 Car18g00249 Cpe09g00942 . Bhi08g01538 Tan05g3011 Cmetu06g0036 Lac10g0613 Hepe07g2082 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011005 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39438 PF00010 HLH 1.80E-09 No_clan Sed TF