Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2410 ATGGCAGCCTTTTCATATCAATATCAACCATTTCAACTTGACTCAATTTTCTATCCCAACAATCCTCTCAAAATGGGTGCCTTTTTTGATGACCCAAATTTCAACTCCAATTGCTTCTCTCAATTTTTCCCTCAAGAACAACAACCCATTTCCCATTTTCCTGAGGTTTCTAAACAGAGCCCTGAATCCTCCATTGTGGTCGACAAATCAGACAGCGGCGAACCGCCGGTCGGAAGCCGGTTCAAGCCGGCCGTTACGGTGACTTCCCCTTGTAGTAAGAAGAGAAAACCCCGTGGAGTTAACTCCTCTGCTAGCTCTGCCCAATCTAAGGATGGAACTGGAAAGAAGCAGAAAAATAAAAAGGAATTAAATGAAAGGAAATCAGAAGAGGAAAAGGCAAAATCTGGGAAAAAAGATGAGAAAAAAGTTTGTGAAGAAAGTGGTGCAACGACAGGTTATATTCATGTCAGAGCTAGAAGGGGCCAAGCCACTGATAGCCACAGTCTTGCAGAGAGGGTGAGAAGAGAGAAGATTAGTGAAAGGATGCAGACATTGCAACGACTTGTTCCTGGTTGCGACAAGGTAACAGGGAAAGCTTTAATGTTGGATGAAATTATCAATTATGTTCAGTCTCTTCAAAATCAAGTTGAGTTTCTCTCCATGAAACTTGCTTCTTTCAGCCCAATTTTCTTCGACTTCAGAATGGACTTGGACGGTCTCATGATCCAACCAGAGACGTCGATGAATGGTATAGCCCCGCAACTACCAGCGATGGCGCAATGCAGCATCGTGCCACCACCGGCGTTGATCGACACCACGATTCCGACAAGCGCCGCCCCGGATATCTATCCTTTGATGGACCATTCAGCTAATATGTTTCTACTTCAGCAAGGGATGAATCCAAACGTTTACTCTCAATCTTCTCAGGACAACGTTAAAGTTTCATCATGGGATGTCGAAGATCAGAAACGAAAGATTCTTATTTCATCAGGAATTGGCGACAATTTGTGTTACTTCCATTAA 1023 43.6 MAAFSYQYQPFQLDSIFYPNNPLKMGAFFDDPNFNSNCFSQFFPQEQQPISHFPEVSKQSPESSIVVDKSDSGEPPVGSRFKPAVTVTSPCSKKRKPRGVNSSASSAQSKDGTGKKQKNKKELNERKSEEEKAKSGKKDEKKVCEESGATTGYIHVRARRGQATDSHSLAERVRREKISERMQTLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASFSPIFFDFRMDLDGLMIQPETSMNGIAPQLPAMAQCSIVPPPALIDTTIPTSAAPDIYPLMDHSANMFLLQQGMNPNVYSQSSQDNVKVSSWDVEDQKRKILISSGIGDNLCYFH 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 37207905 37209739 + Sed0013200.1 Sed08g2410 724186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2410 340 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 55 286 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Sed08g2410 340 FunFam Basic helix-loop-helix transcription factor 159 231 - -
Sed08g2410 340 Gene3D - 159 227 IPR036638 GO:0046983(InterPro)
Sed08g2410 340 CDD bHLH_AtBPE_like 152 237 - -
Sed08g2410 340 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 160 226 IPR036638 GO:0046983(InterPro)
Sed08g2410 340 MobiDBLite consensus disorder prediction 95 112 - -
Sed08g2410 340 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 212 IPR011598 GO:0046983(InterPro)
Sed08g2410 340 Pfam Helix-loop-helix DNA-binding domain 166 213 IPR011598 GO:0046983(InterPro)
Sed08g2410 340 MobiDBLite consensus disorder prediction 113 146 - -
Sed08g2410 340 SMART finulus 168 218 IPR011598 GO:0046983(InterPro)
Sed08g2410 340 MobiDBLite consensus disorder prediction 53 67 - -
Sed08g2410 340 MobiDBLite consensus disorder prediction 53 146 - -
Sed08g2410 340 Coils Coil 120 140 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2410 Sed-Chr8:37207905 Sed11g1869 Sed-Chr11:33289510 1.70E-32 dispersed
Sed01g1541 Sed-Chr1:11150443 Sed08g2410 Sed-Chr8:37207905 1.20E-129 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39439 PF00010 HLH 2.50E-07 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2410 - - - 0.0