Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2416 ATGGGCTGCATTCTTGCCATACAAGCCGTCAACGATCGCCGGAGCACCGACCACCACTCTCACGTCGACGGAGTTAACGGCGAGACAGTTAACCAACAAACACCTTCGCCGGAAAAACAGGACCTCCGGCACGACGTGAACTCCTTCTCTGTAGATCCACGGTGGCCTTCGCCGGACATTTTCCACCGGAACGAGCAAGGTTGGCCGTCGTGGCTACTAGCAGTCGCCGGCGACGTGATTCAAGGCTGGGCGCCTCGTCGAGCCAATACATTTGAGAAGATTGCTAAGATCGGGCAAGGGACGTATAGCAATGTGTATAAGGCTAGGGATCTTGTGAGTGGGAAAATTGTTGCTCTGAAGAAGGTTAGGTTTGATGATTTGGAACCAGAGAGCGTGAGATTTATGGCTAGAGAGATTTTGGTTCTGAAACGCCTTGATCATCCCAATGTGCTTAAGCTTGAAGGCTTAGTTACTTCCAGAATGTCGTGCAGTCTTTACTTAGTGTTCGAGTACATGGAACACGACCTCGCCGGACTCGCTGCCGGTCAAGGAGTCAAGTTCACAGAGCCTCAGGTCAAATGCTATATGAAGCAACTATTATCCGGGCTTGAGCACTGTCACAATCGAGGTGTTTTGCATCGTGATATAAAGGGGTCCAATTTGCTAATTGATAACGAAGGAATACTCAAAATAGCTGACTTTGGGTTAGCTACTTTTTTTGAACCTGAGCAGAAGCAGCATATGACTAGTCGAGTTGTAACCCTTTGGTACCGTCCTCCTGAACTATTGCTTGGAGCTACTCTTTACGGTACAGGGGTCGATCTTTGGAGTGCTGGCTGCATCTTGGCCGAGCTGCTCGCTGGGAGGCCAATCATGCGAGGAAGGACAGAGGCTGAACAACTCCATAAGATATTTAAATTATGTGGTCCTCCAACTGAGGACTACTGGAAGAAATACAAATTGCCGAATGCAACTCTTTTTAAACCCCAGCAACCATGCAAACGCTGCATTGTGGAAACTTTCAAGGATTTTCCATCTTCTTCTCTACCCCTTATCGAATCGCTCCTTACAATGGACCCTGATGGGCGAGGAACTGCCGCTGCTGCTCTGGATAGCGAATTCTTTACTACAGAGCCTCTTGCTTGTGAATCATCAAGTCTACCTGAATATCCTCCTAGCAAAGAATTGGATGTGAAGTTGAGAGATGAGGAAGCTAGAAGGCAAAGAGTTCAAAGTGGGAAAGCAACTGCTGTTGATGTTGGTGGCAGGAGAGTAAGAGTACGGGATCAGGTTAGTCGGGCTGTTCCGGGTCCTGAAGCTAATGCAGAAATACAATCAAACTTAGATAGATGGAGAAATGAGACAAAAGCAAATGGTAAGAGCAAGAGCATTAGCGAGAAGTTTCCAACACATGAGACATCCCAAAGGGGCCATTTATCATCTGGTGCAGCTGATGCTTCATTCAGCTCCATTTTTAATTCAAATTCTGGATCAGTTAAAAGTACACGAGCTCCCGGGGAACCTGCTCGGAGGAAGAAAGCCAATAGAGATAATCCGTCTGTGTCTTCATCTCGAAAGTTCATCCGTGCTCTGAAGCCATCAATCGGGTTACCGATGGATCTTTTGTTTAGAGAGATTTCTGTATATTCTGTAAAATGGGGTTCCAATTTTTCAAATGCTATGATTTTGCTTTGCTTTAGTAATTATTTTTAG 1713 46.35 MGCILAIQAVNDRRSTDHHSHVDGVNGETVNQQTPSPEKQDLRHDVNSFSVDPRWPSPDIFHRNEQGWPSWLLAVAGDVIQGWAPRRANTFEKIAKIGQGTYSNVYKARDLVSGKIVALKKVRFDDLEPESVRFMAREILVLKRLDHPNVLKLEGLVTSRMSCSLYLVFEYMEHDLAGLAAGQGVKFTEPQVKCYMKQLLSGLEHCHNRGVLHRDIKGSNLLIDNEGILKIADFGLATFFEPEQKQHMTSRVVTLWYRPPELLLGATLYGTGVDLWSAGCILAELLAGRPIMRGRTEAEQLHKIFKLCGPPTEDYWKKYKLPNATLFKPQQPCKRCIVETFKDFPSSSLPLIESLLTMDPDGRGTAAAALDSEFFTTEPLACESSSLPEYPPSKELDVKLRDEEARRQRVQSGKATAVDVGGRRVRVRDQVSRAVPGPEANAEIQSNLDRWRNETKANGKSKSISEKFPTHETSQRGHLSSGAADASFSSIFNSNSGSVKSTRAPGEPARRKKANRDNPSVSSSRKFIRALKPSIGLPMDLLFREISVYSVKWGSNFSNAMILLCFSNYF 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 37239123 37243044 + Sed0023080.1 Sed08g2416 724192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2416 570 SUPERFAMILY Protein kinase-like (PK-like) 85 379 IPR011009 -
Sed08g2416 570 MobiDBLite consensus disorder prediction 429 481 - -
Sed08g2416 570 ProSitePatterns Protein kinases ATP-binding region signature. 97 120 IPR017441 GO:0005524(InterPro)
Sed08g2416 570 ProSitePatterns Serine/Threonine protein kinases active-site signature. 211 223 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g2416 570 SMART serkin_6 91 375 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g2416 570 MobiDBLite consensus disorder prediction 449 473 - -
Sed08g2416 570 ProSiteProfiles Protein kinase domain profile. 91 375 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g2416 570 PANTHER CELL DIVISION PROTEIN KINASE 90 375 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Sed08g2416 570 MobiDBLite consensus disorder prediction 14 43 - -
Sed08g2416 570 Gene3D Transferase(Phosphotransferase) domain 1 174 415 - -
Sed08g2416 570 MobiDBLite consensus disorder prediction 495 522 - -
Sed08g2416 570 FunFam probable serine/threonine-protein kinase At1g54610 78 173 - -
Sed08g2416 570 CDD STKc_CDK9_like 91 375 - -
Sed08g2416 570 Pfam Protein kinase domain 91 375 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g2416 570 FunFam probable serine/threonine-protein kinase At1g54610 174 415 - -
Sed08g2416 570 Gene3D Phosphorylase Kinase; domain 1 78 173 - -
Sed08g2416 570 MobiDBLite consensus disorder prediction 505 519 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2416 Sed-Chr8:37239123 Sed12g0863 Sed-Chr12:5354875 6.00E-179 dispersed
Sed01g1547 Sed-Chr1:11185214 Sed08g2416 Sed-Chr8:37239123 7.60E-259 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79698 PF00069 Pkinase 3.90E-67 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2416 K08819 - csv:101205716 863.218