Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2421 ATGTTCGTCCATATTTTGATTACTAAAATTTATTTTCCAATTTTATATTGTATAATATTTTATCAAAACTCTCGTCACCTAATTTTCAATTCCACCAAACAGATGAAATTTAAATTTGTGTTTGGAGTATTTAAACGAGTATTTGATTCTAAAAACTTGAATTCGACCCAAATGAATAGGTTAAAGCTGCATTTGGCGTACGAGTATGCAAAAAGAGGAGCTTGTTTAGTTCTTGTAGCTAGACGTGAGAATCTACTAGAAGAAGTTGCAGAAATAGCTCGATATTACGGATCACCTGATGTAATCACCATTAAAGCCGACGTTTCAAAGTTCGAAGATTGCCGACGCGTGATCAACGACACGATGAATCACTTTGGCAGATTGGATCATTTGGTGAACAATGCTGCAATTACCCATTTGGTGTTATTTGAAGACATAACTGATATTGCTGCATTCAGACAAGTGATGGATATAAACTACTGGGGAGCCGTGTACATAACCCATCTAGCGATTCCGTATTTGAGATACAGCAGAGGGAAGATTGTGGCTCTATCGGCGCCGCCTGCGTGGCTACCGACGCCGAGAATGTGCATTTACAATTCGAGCAAGGCGGCGATTAAGAGCATGTTTGAGACATTGAGAGTGGAACTGTCGCCGGAGATTAGTGTGACAATTGTTACTCCTGGTTTTGTTGAATCCGAACTGACTAAAGGCAAAGCTTTGAATGCTCAAGGCAAAGTTGAACTCCACCAAGACATGAGGGATGCATTGATAGGGGTGGTACCGGTGGAGACGGCGGAGGCGTGCGCGAAGGTGGTTGTGAAGGGAGTGTGCCGGGGAGAGCGGTACGTGACGGAGCCGTCGTGGTACAATGTTCTGTACTATTGGAAGGCGTTTTGGCCGGAGCTGGTGGAGTGGACGTACCGGCTACTGGCAATGCCGGCCGCCGGAGCTTCTGAATCCGACGCCCTTACCAAGCAGGCACTGGATTTCACCGGTGGCAAGTATCTCATGTATCCCCCTTCCATTCGCGCCACCGAGGCCAAAGCCGATTGA 1056 45.55 MFVHILITKIYFPILYCIIFYQNSRHLIFNSTKQMKFKFVFGVFKRVFDSKNLNSTQMNRLKLHLAYEYAKRGACLVLVARRENLLEEVAEIARYYGSPDVITIKADVSKFEDCRRVINDTMNHFGRLDHLVNNAAITHLVLFEDITDIAAFRQVMDINYWGAVYITHLAIPYLRYSRGKIVALSAPPAWLPTPRMCIYNSSKAAIKSMFETLRVELSPEISVTIVTPGFVESELTKGKALNAQGKVELHQDMRDALIGVVPVETAEACAKVVVKGVCRGERYVTEPSWYNVLYYWKAFWPELVEWTYRLLAMPAAGASESDALTKQALDFTGGKYLMYPPSIRATEAKAD 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 37290475 37293586 - Sed0005087.1 Sed08g2421 724197

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2421 351 Gene3D - 63 313 - -
Sed08g2421 351 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 186 214 IPR020904 GO:0016491(InterPro)
Sed08g2421 351 Pfam short chain dehydrogenase 64 239 IPR002347 -
Sed08g2421 351 PRINTS Glucose/ribitol dehydrogenase family signature 219 236 IPR002347 -
Sed08g2421 351 PRINTS Glucose/ribitol dehydrogenase family signature 126 137 IPR002347 -
Sed08g2421 351 PRINTS Glucose/ribitol dehydrogenase family signature 199 218 IPR002347 -
Sed08g2421 351 PRINTS Glucose/ribitol dehydrogenase family signature 173 189 IPR002347 -
Sed08g2421 351 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 64 310 IPR036291 -
Sed08g2421 351 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 199 218 IPR002347 -
Sed08g2421 351 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 126 137 IPR002347 -
Sed08g2421 351 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 179 187 IPR002347 -
Sed08g2421 351 PANTHER RETINOL DEHYDROGENASE-RELATED 63 312 - GO:0005829(PANTHER)|GO:0008202(PANTHER)|GO:0016491(PANTHER)|GO:0072582(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2421 K22418 - - csv:101220450 513.457
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2421 Sed-Chr8:37290475 Sed08g2816 Sed-Chr8:39559574 6.90E-08 dispersed
Sed10g1595 Sed-Chr10:32486192 Sed08g2421 Sed-Chr8:37290475 1.60E-60 transposed
Sed01g1553 Sed-Chr1:11246145 Sed08g2421 Sed-Chr8:37290475 1.30E-82 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g78 . . . . . . . . Cmo13g00851 Cmo18g00230 . . . . . Cpe20g00296 . . . . . . . . . . . . . . . . . . . Lsi02g00518 Csa01g00980 Chy12g01152 Cme12g01573 . . . . . . Bma03g01242 . Sed08g2421 . . Cma13g00820 Cma18g00306 Car13g00664 Car18g00241 . . Bhi08g01520 Tan05g2993 Cmetu12g1667 Lac10g0600 . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000732 2 6 3 2 1 3 2 3 3 3 1 3 4 4 4 4 3 1 2 3 3 5 4 4 3 3 4 2 4 4 93