Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2423 ATGGCGTCAATTGACAAGAATAAGTATTCTCTCAAATTCAACTCCGGTACCGGCGCATATCTGATTCCGGGAAGCCACAGCGGAGGCGATGTAAAGTGGCGGTGTGCGAGGGCGAGGCGAAAAATGAGAGTGGACTTGAAGAAGGTAAATGGGGTCCACGAAGGCGGCGTTGAACAAGATAAGGCTGTTGGTAACTGTCTTGTTGGGAGATTTGTGGAAGAAGATGATGAAATTATAAACCACGAAACGGCGTTGAATCACGTAACAAGCTCGGGGCTAGCCGGAAATGACTTCGGGGCGACCCGAGAGATGAGCCTCCGGAAACTGATCTGGGTTGTACACGGGTCCATATGTGGTAAAAATGGGATGCGGCGTGATTGGATCATAAGAGATTACCATACTCGACAAGTTATAGCAACAGCCACCATCACACAAGAGTTGACTCCCTTTTACCTTAACCGACCAACCGCTATTCCTAACCATAATAACCACTCTGACAAGATCGATAAGCTCACTGATCAGACCGCCCACAGAATCCGATCCGGTTTAGCTCCAAGATGGAATGACATGGATGTTAACCAGCACTGTCAACAACGTTATATACATCGGAGTGTACCAATAAATGTGTTGGAAGATTTTAATCTGACGAGCATGACACTGGAATATCGAAGAGAATGCAGGCAATCCAATCTGCTTGAGCCATTGACCAGCACGGTCGTCGCCACCACCGCCGCAACCGATCGAGACTCTCGTAATTACACGCACCTTCTTCGCATGCAACCCGACAAGGCTGAAATTGTAAGAGCTAGAACTCAGTGGAAATCCAAGCCTAAACTTAATTAA 843 47.45 MASIDKNKYSLKFNSGTGAYLIPGSHSGGDVKWRCARARRKMRVDLKKVNGVHEGGVEQDKAVGNCLVGRFVEEDDEIINHETALNHVTSSGLAGNDFGATREMSLRKLIWVVHGSICGKNGMRRDWIIRDYHTRQVIATATITQELTPFYLNRPTAIPNHNNHSDKIDKLTDQTAHRIRSGLAPRWNDMDVNQHCQQRYIHRSVPINVLEDFNLTSMTLEYRRECRQSNLLEPLTSTVVATTAATDRDSRNYTHLLRMQPDKAEIVRARTQWKSKPKLN 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 37300887 37303517 + Sed0022142.1 Sed08g2423 724199

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2423 280 Gene3D Hotdog Thioesterase 115 279 - -
Sed08g2423 280 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 180 273 IPR029069 -
Sed08g2423 280 PANTHER OLEOYL-ACYL CARRIER PROTEIN THIOESTERASE 1, CHLOROPLASTIC 81 114 IPR045023 GO:0000036(PANTHER)|GO:0006633(InterPro)|GO:0016297(InterPro)|GO:0016297(PANTHER)
Sed08g2423 280 Pfam Acyl-ACP thioesterase C-terminal domain 176 274 IPR049427 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2423 K10781 - - csv:101218502 274.248
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2423 Sed-Chr8:37300887 Sed12g2425 Sed-Chr12:33958009 2.90E-33 dispersed
Sed08g2423 Sed-Chr8:37300887 Sed08g0738 Sed-Chr8:5486023 2.60E-34 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g82 . . . . . . . . . . . . . . . Cpe20g00297 . . . . . . . . . . . . . . . . . . . . . Chy12g01154 Cme12g01576 . . Bda11g01589 . . . . . Sed08g2423 . . . . . . . . Bhi08g01516 Tan05g2990 Cmetu12g0820 Lac10g0598 Hepe07g2122 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012249 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 2 29