Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2424 ATGGGAGAGATGGAGGAGACCCAAATGGATGCAAACCAGCCACCGGCTGATGATGTGAAGGAAACAAAGGAGGACCAGAAGCCGGCGCCGGAGAAGGAGGAGAAACAAACAGAGGAAGCTCCGCCGCCGCCGCCGCCGGAGATCGTGCTGAAAGTTTACATGCATTGTGAAGGATGCGCTCGGAAAGTTCGGCGATGTCTCCGAGGATTTGAAGGAGTTGAAGATGTAACCACGGATTGCAAGTCTCATAAAGTGGTTGTGAAAGGGGAAAAGGCGGATCCATTGAAGGTGTTGAACAGAGTACAGAGAAAGAGCCACAGACAGGTCGAGCTTCTATCTCCGATCCCAAAGCCGCCGGTGCCGGCGCCGGCGCCGGAGGAGAAAGAAAAACCCAAACCCGAAGAGAAAAAAGAAGAGCCTCAAGTTGTGACAGTGGTGTTAAGAGTCCATATGCATTGTGAAGGCTGTGCTCTAGAAATTAAGAAGCGGATATTGAGAATGAAAGGGGTAGATTCTGTAGAGCCAGATCTGAAAGGCTCACAAGTTTCAGTAACGGGCATTTTCGACCCACCAAAGCTGGTGGATTATGTACACAGAAGAACTGGAAAAAACGTTGTAATTGTAAAGACAGATCCAGAAAAGAAAGAGGCAGAGACCAAAGAAGTGAAAGAAGAGAAGGCAAATGAAGAAGCCGGGAAAGAGAAGGGCGGCGACGGCGGCGGCGGCGGTGACGGGGAAGGGAAAGAGAGCAAGAAAGAAGGAGACGGCGGCGGAGGAGAGGCGAAAGCTGCCGGAGAAGCGGCGGTGGCGGCGACGACGGCGGCAGTGGCGGAAGAAACTAAAATTGTGGAGATTATAAAAAATGAGTATCAATTTTACCCACAAAGGTACGCCATGGAATTGTACGCTTATCCGCCTCAGATTTTCAGTGATGAAAATCCAAATGCTTGTTCTGTGATGTGA 963 50.36 MGEMEETQMDANQPPADDVKETKEDQKPAPEKEEKQTEEAPPPPPPEIVLKVYMHCEGCARKVRRCLRGFEGVEDVTTDCKSHKVVVKGEKADPLKVLNRVQRKSHRQVELLSPIPKPPVPAPAPEEKEKPKPEEKKEEPQVVTVVLRVHMHCEGCALEIKKRILRMKGVDSVEPDLKGSQVSVTGIFDPPKLVDYVHRRTGKNVVIVKTDPEKKEAETKEVKEEKANEEAGKEKGGDGGGGGDGEGKESKKEGDGGGGEAKAAGEAAVAATTAAVAEETKIVEIIKNEYQFYPQRYAMELYAYPPQIFSDENPNACSVM 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 37318621 37320242 - Sed0018440.1 Sed08g2424 724200

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2424 320 SUPERFAMILY HMA, heavy metal-associated domain 48 104 IPR036163 GO:0046872(InterPro)
Sed08g2424 320 Gene3D - 45 117 - -
Sed08g2424 320 CDD HMA 54 110 IPR006121 GO:0046872(InterPro)
Sed08g2424 320 MobiDBLite consensus disorder prediction 16 40 - -
Sed08g2424 320 Gene3D - 139 208 - -
Sed08g2424 320 Coils Coil 214 234 - -
Sed08g2424 320 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 7 33 320 IPR044577 GO:0046872(InterPro)
Sed08g2424 320 MobiDBLite consensus disorder prediction 213 259 - -
Sed08g2424 320 ProSiteProfiles Heavy-metal-associated domain profile. 45 109 IPR006121 GO:0046872(InterPro)
Sed08g2424 320 MobiDBLite consensus disorder prediction 123 140 - -
Sed08g2424 320 MobiDBLite consensus disorder prediction 1 47 - -
Sed08g2424 320 ProSiteProfiles Heavy-metal-associated domain profile. 142 206 IPR006121 GO:0046872(InterPro)
Sed08g2424 320 CDD HMA 146 186 IPR006121 GO:0046872(InterPro)
Sed08g2424 320 SUPERFAMILY HMA, heavy metal-associated domain 140 211 IPR036163 GO:0046872(InterPro)
Sed08g2424 320 MobiDBLite consensus disorder prediction 105 140 - -
Sed08g2424 320 Pfam Heavy-metal-associated domain 52 102 IPR006121 GO:0046872(InterPro)
Sed08g2424 320 Pfam Heavy-metal-associated domain 147 196 IPR006121 GO:0046872(InterPro)
Sed08g2424 320 MobiDBLite consensus disorder prediction 213 270 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2424 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0107 Sed-Chr7:997903 Sed08g2424 Sed-Chr8:37318621 7.60E-30 dispersed
Sed08g2424 Sed-Chr8:37318621 Sed14g1282 Sed-Chr14:21783855 2.00E-38 dispersed
Sed08g0021 Sed-Chr8:74554 Sed08g2424 Sed-Chr8:37318621 1.40E-55 transposed
Sed01g1554 Sed-Chr1:11273091 Sed08g2424 Sed-Chr8:37318621 2.20E-93 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g83 . Blo16g00277 . . . . Bma06g00269 . Cmo13g00848 Cmo18g00228 Cma10g00050 Cma11g00024 Car10g00039 Car11g00024 Sed08g0021 Cpe20g00298 Cpe04g01624 Bhi02g00667 Tan09g2388 Cmetu02g1739 . Hepe09g0037 . . Cla06g01754 Cam06g1946 Cec06g1996 Cco06g2001 Clacu06g1903 Cmu06g1843 Cre06g2656 . Cone16ag0007 Cone13ag0233 Cone19ag0219 Lsi02g00515 Csa01g00978 Chy12g01155 Cme12g01577 . . Bda11g01590 Bda14g01351 . Bpe15g00226 Bma03g01247 . Sed08g2424 . Cmo11g00025 Cma13g00818 Cma18g00308 Car13g00662 Car18g00239 Cpe09g00951 Cpe18g00916 Bhi08g01515 Tan05g2989 Cmetu12g1119 Lac10g0597 Hepe07g2121 . . Cla03g00367 Cam03g0386 Cec03g0372 Cco03g0387 Clacu03g0385 Cmu03g0990 Cre03g0682 Lsi06g01653 Csa01g00043 Chy02g02675 Cme02g02079
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001843 2 2 2 2 2 2 4 2 2 2 2 2 4 2 2 3 2 1 4 2 2 2 1 2 2 2 2 3 3 2 67