Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2438 ATGGCTACGCCGACCACCAGATTTGGCGGCGGCGATGGTGGAGGCAACGGCGGTGGTGGCGAGGACCGAGTTATGGCTACGGCTCAACAGATACTCAATAGTCTCAACGCTCCGAAGGAGGTTCGAGACGACATGCTTCTGATCTTCTCCAGTTTCGACAATCGTCTCTCGAATATCACCAGTTTGGTCAATAGCCGAGATTCGAAGAAGACGGAGGAGGAGGATCGATTTGAAGCTGCCGAGAAGGTGATTCTTCGTTGGGATTCTGGCCATGGAGTTTCTAGGAACTCCATTAATTGGGAGGACTCGCCGGATGAGGCGGCTGAGTACTTATCGGCGGTCGATGATATCATTCAGTTGATCGACGACTTTTCGATTCGTTCCGATTCCGCTGAGATCGTCGAGCGCGCTGAAAACGCGATCCAGATCGCTATGTCTAGGCTCGAGGACGAGTTTCGTCATATGTTGATTCGGAGCACCGTTCCTCTCGACGCCGAGCATCTCCACGGCTCAATCCGTAGGGTTTCCCTCTCTTTTGCTTCACACGACAGCGAAAATTCGGATGAATTCGAGTCGTTTGCCGATGACCGTGGTTCTGGAATTTTCCATGAGCGTGGGGTCAGTTTGGGCGATGATTTGCGGGTGGATTTGATTCGTCCTGATGCTGTTGTTGATCTGAAAGAGATTGTTGACCGGATGATTCGATCCGGATATGAAAAAGAGTGTGTGAATGTGTATACTAGTGTTCGACGCGATGCGTTAGACGAGTGCTTGGTGGTTCTGGGAGTTGAGAAGCTAAGTATTGAGGATGTTCAGAAAATTGACTGGAAAATTTTGGATGAGAAGATGAAGAAATGGATTCAAGCAGTTAAGGTCAGCGGCCGAGTTCTATTGACGGGCGAGAAGCGATTGTGTGACTATTTCTTTAGCGGGTCTGATGACTCGGAGGAAGTTTGTTTCAATGAGATCGCAAAAGGGTGCATCAGGCAATTGCTGAATTTTGCAGAGGCCATTGCTATAGGGGAAAGGTCAGTGGAGAAGCTTTTTCGTATTCTTGATATGTATGAAGCTCTGGCATATGTTTTGCCAGACTTGCAGGCTATGGTAAGTGATGAATTTGTGATCGAGGAGGCGAAAGGAGTGCTTTCGAGGCTGGGAGAGGCAGCTAAAGGTACATTTGTTGAATTTGAGAATGCAGTTCGGAATGAGACTTCTAAGAAAACGATGTTAAATGCCGAGATTCACCCGCTCACTCGTTATGTTATGAATTACTTACGATTGCTTGTGGTTTATAGTAAAACTCTGGATGAACTTTTAGAAGGTGATGATGAGGATTTTCATCATCTAGGGGGTGATAGTGCTGACAATTTGGAGTTAGAAACTATGTCTCCTTTAGCTCGTCGACTGTTCTCATTGATAGCATCGCTGGAGATCAATCTTGACAGGAAATCCAAACTTTATGGGGATGATGCAATACAGTATATATTTCTCATGAATAATATACAATACATTGTGCAGAAAGCAAAAGATTCTGAGCTTGGAAAGCTCTTGGGTGACCGTTGGGTACGTAAGCGTCGAGGCCAGGTTCGCATATACGCAACAAGCTATCTCAGGGCTTCTTGGGGCCAATTATTATCTTTCTTGAAGGAAGAAGGGACAGGTGGGAGCTCCAGTAGTGCCCTGAAACTAGCTTCTGTAAAGGAAAAATTCAAAAATTTTAATGCTGGCTTTGAGGAACTCTATAGGATTCAGACAGGTTGGAAGGTTGCAGATCCGCAACTACGAGAAGAGCTTCGAATTTCAATATCAGCAAAGGCGTTGCCTGCGTATCGTGCTTTCTTTGGAAGGCATGGAAGTCAGTTAGAGAATACAAGACATGCTGGGAGGTATTTGAAGTACTCATCGGACGACTTGGAGAGCTATTTAGTGGATTTGTTCGAAGGATCATCTTGTGTTATACACCATTTACGAAGAAAAAGTAGTTCATAG 1989 45.75 MATPTTRFGGGDGGGNGGGGEDRVMATAQQILNSLNAPKEVRDDMLLIFSSFDNRLSNITSLVNSRDSKKTEEEDRFEAAEKVILRWDSGHGVSRNSINWEDSPDEAAEYLSAVDDIIQLIDDFSIRSDSAEIVERAENAIQIAMSRLEDEFRHMLIRSTVPLDAEHLHGSIRRVSLSFASHDSENSDEFESFADDRGSGIFHERGVSLGDDLRVDLIRPDAVVDLKEIVDRMIRSGYEKECVNVYTSVRRDALDECLVVLGVEKLSIEDVQKIDWKILDEKMKKWIQAVKVSGRVLLTGEKRLCDYFFSGSDDSEEVCFNEIAKGCIRQLLNFAEAIAIGERSVEKLFRILDMYEALAYVLPDLQAMVSDEFVIEEAKGVLSRLGEAAKGTFVEFENAVRNETSKKTMLNAEIHPLTRYVMNYLRLLVVYSKTLDELLEGDDEDFHHLGGDSADNLELETMSPLARRLFSLIASLEINLDRKSKLYGDDAIQYIFLMNNIQYIVQKAKDSELGKLLGDRWVRKRRGQVRIYATSYLRASWGQLLSFLKEEGTGGSSSSALKLASVKEKFKNFNAGFEELYRIQTGWKVADPQLREELRISISAKALPAYRAFFGRHGSQLENTRHAGRYLKYSSDDLESYLVDLFEGSSCVIHHLRRKSSS 662
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 37407388 37410034 + Sed0002707.1 Sed08g2438 724214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2438 662 PANTHER EXOCYST COMPLEX PROTEIN EXO70 58 649 IPR004140 GO:0000145(InterPro)|GO:0000145(PANTHER)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Sed08g2438 662 FunFam Exocyst subunit Exo70 family protein 93 654 - -
Sed08g2438 662 SUPERFAMILY Cullin repeat-like 76 647 IPR016159 -
Sed08g2438 662 MobiDBLite consensus disorder prediction 1 22 - -
Sed08g2438 662 Gene3D Exocyst complex component Exo70 93 652 - -
Sed08g2438 662 Pfam Exo70 exocyst complex subunit C-terminal 284 642 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Sed08g2438 662 Pfam Exocyst complex component Exo70 N-terminal 77 157 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0032 Sed-Chr8:145981 Sed08g2438 Sed-Chr8:37407388 2.00E-239 dispersed
Sed08g2120 Sed-Chr8:35182356 Sed08g2438 Sed-Chr8:37407388 1.30E-97 dispersed
Sed08g2438 Sed-Chr8:37407388 Sed12g2505 Sed-Chr12:34551622 8.20E-228 dispersed
Sed01g1201 Sed-Chr1:8974012 Sed08g2438 Sed-Chr8:37407388 5.60E-109 transposed
Sed01g1563 Sed-Chr1:11366071 Sed08g2438 Sed-Chr8:37407388 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2438 K07195 - csv:101212753 1139.79