Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2438 ATGGCTACGCCGACCACCAGATTTGGCGGCGGCGATGGTGGAGGCAACGGCGGTGGTGGCGAGGACCGAGTTATGGCTACGGCTCAACAGATACTCAATAGTCTCAACGCTCCGAAGGAGGTTCGAGACGACATGCTTCTGATCTTCTCCAGTTTCGACAATCGTCTCTCGAATATCACCAGTTTGGTCAATAGCCGAGATTCGAAGAAGACGGAGGAGGAGGATCGATTTGAAGCTGCCGAGAAGGTGATTCTTCGTTGGGATTCTGGCCATGGAGTTTCTAGGAACTCCATTAATTGGGAGGACTCGCCGGATGAGGCGGCTGAGTACTTATCGGCGGTCGATGATATCATTCAGTTGATCGACGACTTTTCGATTCGTTCCGATTCCGCTGAGATCGTCGAGCGCGCTGAAAACGCGATCCAGATCGCTATGTCTAGGCTCGAGGACGAGTTTCGTCATATGTTGATTCGGAGCACCGTTCCTCTCGACGCCGAGCATCTCCACGGCTCAATCCGTAGGGTTTCCCTCTCTTTTGCTTCACACGACAGCGAAAATTCGGATGAATTCGAGTCGTTTGCCGATGACCGTGGTTCTGGAATTTTCCATGAGCGTGGGGTCAGTTTGGGCGATGATTTGCGGGTGGATTTGATTCGTCCTGATGCTGTTGTTGATCTGAAAGAGATTGTTGACCGGATGATTCGATCCGGATATGAAAAAGAGTGTGTGAATGTGTATACTAGTGTTCGACGCGATGCGTTAGACGAGTGCTTGGTGGTTCTGGGAGTTGAGAAGCTAAGTATTGAGGATGTTCAGAAAATTGACTGGAAAATTTTGGATGAGAAGATGAAGAAATGGATTCAAGCAGTTAAGGTCAGCGGCCGAGTTCTATTGACGGGCGAGAAGCGATTGTGTGACTATTTCTTTAGCGGGTCTGATGACTCGGAGGAAGTTTGTTTCAATGAGATCGCAAAAGGGTGCATCAGGCAATTGCTGAATTTTGCAGAGGCCATTGCTATAGGGGAAAGGTCAGTGGAGAAGCTTTTTCGTATTCTTGATATGTATGAAGCTCTGGCATATGTTTTGCCAGACTTGCAGGCTATGGTAAGTGATGAATTTGTGATCGAGGAGGCGAAAGGAGTGCTTTCGAGGCTGGGAGAGGCAGCTAAAGGTACATTTGTTGAATTTGAGAATGCAGTTCGGAATGAGACTTCTAAGAAAACGATGTTAAATGCCGAGATTCACCCGCTCACTCGTTATGTTATGAATTACTTACGATTGCTTGTGGTTTATAGTAAAACTCTGGATGAACTTTTAGAAGGTGATGATGAGGATTTTCATCATCTAGGGGGTGATAGTGCTGACAATTTGGAGTTAGAAACTATGTCTCCTTTAGCTCGTCGACTGTTCTCATTGATAGCATCGCTGGAGATCAATCTTGACAGGAAATCCAAACTTTATGGGGATGATGCAATACAGTATATATTTCTCATGAATAATATACAATACATTGTGCAGAAAGCAAAAGATTCTGAGCTTGGAAAGCTCTTGGGTGACCGTTGGGTACGTAAGCGTCGAGGCCAGGTTCGCATATACGCAACAAGCTATCTCAGGGCTTCTTGGGGCCAATTATTATCTTTCTTGAAGGAAGAAGGGACAGGTGGGAGCTCCAGTAGTGCCCTGAAACTAGCTTCTGTAAAGGAAAAATTCAAAAATTTTAATGCTGGCTTTGAGGAACTCTATAGGATTCAGACAGGTTGGAAGGTTGCAGATCCGCAACTACGAGAAGAGCTTCGAATTTCAATATCAGCAAAGGCGTTGCCTGCGTATCGTGCTTTCTTTGGAAGGCATGGAAGTCAGTTAGAGAATACAAGACATGCTGGGAGGTATTTGAAGTACTCATCGGACGACTTGGAGAGCTATTTAGTGGATTTGTTCGAAGGATCATCTTGTGTTATACACCATTTACGAAGAAAAAGTAGTTCATAG 1989 45.75 MATPTTRFGGGDGGGNGGGGEDRVMATAQQILNSLNAPKEVRDDMLLIFSSFDNRLSNITSLVNSRDSKKTEEEDRFEAAEKVILRWDSGHGVSRNSINWEDSPDEAAEYLSAVDDIIQLIDDFSIRSDSAEIVERAENAIQIAMSRLEDEFRHMLIRSTVPLDAEHLHGSIRRVSLSFASHDSENSDEFESFADDRGSGIFHERGVSLGDDLRVDLIRPDAVVDLKEIVDRMIRSGYEKECVNVYTSVRRDALDECLVVLGVEKLSIEDVQKIDWKILDEKMKKWIQAVKVSGRVLLTGEKRLCDYFFSGSDDSEEVCFNEIAKGCIRQLLNFAEAIAIGERSVEKLFRILDMYEALAYVLPDLQAMVSDEFVIEEAKGVLSRLGEAAKGTFVEFENAVRNETSKKTMLNAEIHPLTRYVMNYLRLLVVYSKTLDELLEGDDEDFHHLGGDSADNLELETMSPLARRLFSLIASLEINLDRKSKLYGDDAIQYIFLMNNIQYIVQKAKDSELGKLLGDRWVRKRRGQVRIYATSYLRASWGQLLSFLKEEGTGGSSSSALKLASVKEKFKNFNAGFEELYRIQTGWKVADPQLREELRISISAKALPAYRAFFGRHGSQLENTRHAGRYLKYSSDDLESYLVDLFEGSSCVIHHLRRKSSS 662
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 37407388 37410034 + Sed0002707.1 Sed08g2438 724214

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2438 662 PANTHER EXOCYST COMPLEX PROTEIN EXO70 58 649 IPR004140 GO:0000145(InterPro)|GO:0000145(PANTHER)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Sed08g2438 662 FunFam Exocyst subunit Exo70 family protein 93 654 - -
Sed08g2438 662 SUPERFAMILY Cullin repeat-like 76 647 IPR016159 -
Sed08g2438 662 MobiDBLite consensus disorder prediction 1 22 - -
Sed08g2438 662 Gene3D Exocyst complex component Exo70 93 652 - -
Sed08g2438 662 Pfam Exo70 exocyst complex subunit C-terminal 284 642 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Sed08g2438 662 Pfam Exocyst complex component Exo70 N-terminal 77 157 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2438 K07195 - - csv:101212753 1139.79
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0032 Sed-Chr8:145981 Sed08g2438 Sed-Chr8:37407388 2.00E-239 dispersed
Sed08g2120 Sed-Chr8:35182356 Sed08g2438 Sed-Chr8:37407388 1.30E-97 dispersed
Sed08g2438 Sed-Chr8:37407388 Sed12g2505 Sed-Chr12:34551622 8.20E-228 dispersed
Sed01g1201 Sed-Chr1:8974012 Sed08g2438 Sed-Chr8:37407388 5.60E-109 transposed
Sed01g1563 Sed-Chr1:11366071 Sed08g2438 Sed-Chr8:37407388 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g116 . Blo16g00265 . . Bpe12g00483 Bpe13g00204 Bma06g00256 . Cmo13g00835 . Cma10g00065 Cma11g00035 Car10g00053 Car11g00032 . Cpe20g00308 Cpe04g01614 . . . . . . . . . . . . . . . . . Cone19ag0206 . . Chy12g01170 Cme12g01592 . . Bda11g01602 Bda14g01366 . Bpe15g00216 Bma03g01256 . Sed08g2438 Cmo10g00061 Cmo11g00037 Cma13g00803 Cma18g00319 Car13g00651 Car18g00228 Cpe09g00962 . Bhi08g01486 Tan05g2961 Cmetu04g0927 Lac10g0582 Hepe07g2107 . . Cla03g00352 Cam03g0370 Cec03g0358 Cco03g0373 Clacu03g0370 Cmu03g0976 Cre03g0668 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed06g1977 . 10 651 EXO70 exocyst subunit family AT5G03540 75.6 1.1e-280 963.4
Sed07g2172 . 10 653 EXO70 exocyst subunit family AT5G03540 74.6 2.3e-278 955.7
Sed14g0271 . 40 675 EXO70 exocyst subunit family AT5G03540 68.7 1.6e-255 879.8
Sed14g0272 . 40 667 EXO70 exocyst subunit family AT5G03540 68.1 7.4e-253 870.9
Sed14g0274 . 1 561 EXO70 exocyst subunit family AT5G03540 68.0 3.2e-224 775.8
Sed14g0273 . 1 553 EXO70 exocyst subunit family AT5G03540 67.3 1.5e-221 766.9
Sed14g0271 . 40 675 EXO70 exocyst subunit family AT5G52340 77.5 4.1e-285 978.0
Sed14g0272 . 40 667 EXO70 exocyst subunit family AT5G52340 76.4 1.5e-279 959.5
Sed06g1977 . 12 651 EXO70 exocyst subunit family AT5G52340 72.7 1.9e-266 916.0
Sed07g2172 . 10 653 EXO70 exocyst subunit family AT5G52340 71.4 5.3e-261 897.9
Sed14g0274 . 1 561 EXO70 exocyst subunit family AT5G52340 77.4 1.3e-251 866.7
Sed14g0273 . 1 553 EXO70 exocyst subunit family AT5G52340 76.1 4.9e-246 848.2
Sed14g0271 . 184 671 EXO70 exocyst subunit family AT5G52350 61.5 9.3e-167 584.7
Sed14g0274 . 70 557 EXO70 exocyst subunit family AT5G52350 61.5 9.3e-167 584.7
Sed06g1977 . 147 651 EXO70 exocyst subunit family AT5G52350 57.9 5.3e-162 568.9
Sed14g0272 . 184 663 EXO70 exocyst subunit family AT5G52350 60.2 1.5e-161 567.4
Sed14g0273 . 70 549 EXO70 exocyst subunit family AT5G52350 60.2 1.5e-161 567.4
Sed07g2172 . 147 653 EXO70 exocyst subunit family AT5G52350 57.9 5.8e-161 565.5
Sed01g1201 . 1 627 EXO70 exocyst subunit family AT5G58430 65.5 5.0e-243 838.2
Sed01g1201 . 1 626 EXO70 exocyst subunit family AT1G07000 52.1 1.3e-171 600.9
Sed02g1010 . 63 671 EXO70 exocyst subunit family AT5G13150 50.9 1.1e-163 574.7
Sed03g0894 . 9 512 EXO70 exocyst subunit family AT5G13150 52.1 4.7e-151 532.7
Sed01g2974 . 83 661 EXO70 exocyst subunit family AT5G13990 51.9 3.8e-175 612.8
Sed03g0894 . 5 507 EXO70 exocyst subunit family AT5G13990 55.2 1.3e-164 577.8
Sed06g0018 . 9 610 EXO70 exocyst subunit family AT1G72470 63.6 2.5e-210 729.6
Sed06g2306 . 10 611 EXO70 exocyst subunit family AT1G72470 59.9 1.5e-194 677.2
Sed06g0018 . 9 608 EXO70 exocyst subunit family AT1G54090 60.5 2.9e-203 706.1
Sed06g2306 . 3 609 EXO70 exocyst subunit family AT1G54090 58.7 1.0e-195 681.0
Sed06g0018 . 1 609 EXO70 exocyst subunit family AT3G14090 62.3 1.1e-213 740.7
Sed06g2306 . 10 610 EXO70 exocyst subunit family AT3G14090 60.6 1.7e-203 706.8
Sed08g2438 . 21 660 EXO70 exocyst subunit family AT5G50380 62.9 1.4e-227 786.9
Sed01g1563 . 17 654 EXO70 exocyst subunit family AT5G50380 61.8 5.3e-222 768.5
Sed08g0032 . 14 650 EXO70 exocyst subunit family AT5G50380 60.6 3.0e-217 752.7
Sed12g2505 . 10 634 EXO70 exocyst subunit family AT5G50380 58.6 1.8e-209 726.9
Sed01g1298 . 1 671 EXO70 exocyst subunit family AT4G31540 73.4 2.2e-292 1002.3
Sed03g1531 . 13 679 EXO70 exocyst subunit family AT4G31540 72.6 3.5e-290 995.0
Sed07g2435 . 45 589 EXO70 exocyst subunit family AT2G39380 50.1 1.3e-142 504.6
Sed02g0708 . 34 628 EXO70 exocyst subunit family AT3G09520 54.5 1.1e-173 607.8
Sed04g1299 . 35 635 EXO70 exocyst subunit family AT3G09520 53.3 2.5e-170 596.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001393 4 1 3 4 4 2 4 2 2 2 2 2 4 2 2 3 2 2 4 2 2 2 2 2 2 2 2 4 2 1 74