Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2440 ATGGCGGTTTCACTGTGCGACGTGAAATCAGCAGCCGGTTTGAAAAATCTCGACGACTACCTGCTCAGTCGTAGCTACATTTCTGGATATCAACCTTCAAAGGATGATGTCGCCGTTTACGAAGCTATCTCCAAGCCCATTTCCGGCGAATATGTCAACGTAGCTAGATGGGCCAACCACATCGAAACACTCGTGAGAGCCTCTTCTGTTTTTGGAGAGGGTTCTGGCGTTAAGTTCGAATCAACAACCCCACCTGCTGCAGATGCGAAGGCTAGTGCGGCCGATGAAGATGATGACGATGATATTGATCTGTTTGGCGAAGAGACCGAAGAGGAAAAGAAGGCTGCTGAGGAGCGTGCAGCTTCCATCAAGGCTTCTACTAAGAAGAAAGAGAGTGGCAAATCATCAGTTCTGATGGATATCAAGCCTTGGGATGACGAAACTGACATGAAGAAACTTGAAGAGGCTGTCAGAAGTGTTCAGATGGAAGGCTTGCTTTGGGGAGCATCCAAACTCGTACCGGTTGGATATGGTATCAAGAAACTGCAGGTAATGCTCACAATTGTTGATGATCTTGTGTCTGTTGATTCTCTCATTGAGGAGCAACTCACAGTTGAACCCATAAGCGAGTATGTTCAGAGCTGTGATATCGTCGCCTTCAACAAGATCTAG 672 47.02 MAVSLCDVKSAAGLKNLDDYLLSRSYISGYQPSKDDVAVYEAISKPISGEYVNVARWANHIETLVRASSVFGEGSGVKFESTTPPAADAKASAADEDDDDDIDLFGEETEEEKKAAEERAASIKASTKKKESGKSSVLMDIKPWDDETDMKKLEEAVRSVQMEGLLWGASKLVPVGYGIKKLQVMLTIVDDLVSVDSLIEEQLTVEPISEYVQSCDIVAFNKI 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 37415443 37418153 - Sed0001571.1 Sed08g2440 724216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2440 223 Coils Coil 106 126 - -
Sed08g2440 223 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 1 223 IPR049720 GO:0003746(InterPro)|GO:0005085(PANTHER)|GO:0005829(PANTHER)|GO:0005853(InterPro)|GO:0006414(PANTHER)
Sed08g2440 223 Gene3D - 2 75 - -
Sed08g2440 223 MobiDBLite consensus disorder prediction 109 128 - -
Sed08g2440 223 Gene3D - 127 223 IPR014717 -
Sed08g2440 223 FunFam Elongation factor 1-beta 1 like 127 223 - -
Sed08g2440 223 MobiDBLite consensus disorder prediction 76 101 - -
Sed08g2440 223 SUPERFAMILY eEF-1beta-like 131 223 IPR036219 -
Sed08g2440 223 CDD EF1B 132 223 IPR014038 GO:0003746(InterPro)|GO:0006414(InterPro)
Sed08g2440 223 SMART EF1_GNE_2 134 223 IPR014038 GO:0003746(InterPro)|GO:0006414(InterPro)
Sed08g2440 223 FunFam Elongation factor 1-delta 1 3 78 - -
Sed08g2440 223 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 212 223 IPR001326 GO:0003746(InterPro)|GO:0006414(InterPro)
Sed08g2440 223 SUPERFAMILY GST C-terminal domain-like 10 68 IPR036282 -
Sed08g2440 223 Pfam EF-1 guanine nucleotide exchange domain 136 223 IPR014038 GO:0003746(InterPro)|GO:0006414(InterPro)
Sed08g2440 223 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 98 106 IPR001326 GO:0003746(InterPro)|GO:0006414(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1571 Sed-Chr1:11408661 Sed08g2440 Sed-Chr8:37415443 2.60E-77 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2440 K03232 - csv:101215489 345.51