Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2444 ATGGCGTTGGCTGTGTGCAGCGACAAGAACATGGGATCGGGGATTACGATTTGGGATTCAAAAACTGGCGAAACTCTCCTTCGAATTCCGACCTGCGCTTCGCCTCCTTACGGTTTGATTTTCTTGAGAAATGAGTTCCTTGTTGCTTCTCAAACTCGCAAGGAAGGATCCGTCGGTGGTGGATCCATCTTCATCTGGTCCCTCAACAAGCCTCAGTCTCCTATTACGAGCTATCCATTGGAGCCCATTGGACCACTTACCTCAACAAAGGACAGTGTATATCTTGCAGGGGGAGCTCATTCTGGAAATATTCATCTTTGGGAGGTTGGTAGTGGTAAATTGCTCAAGATTTGGAGTGGTAACAATAAACCCATAAAATGCATTCTGTTTTCTTGGGACGATTCGTTTCTCATTACCGGTTCGGCTGATGGAACGATTTGCATCTGGTCGATGATTGATTTGCTGGATGTGGAACTTGTGGGAAGCTCACAACCAATATTGTATCGTCTCATGGAACATAAGTCCTCTTTAACTGGGCTTCTCACTATGTCTGGCTGCTCGATGCCGATGATCATTTCAAGCTCCCTTGATGGCAGTTTAAAGTTTTGGGATTTAATGTCGGGAATGATTAGGGGGACTCAAACTTACATAGAGGGTATCACTACAATCGTTCTTCATCCAACCGAGCAATTTATATTCTATGGGACCATTGATGGGAAGATTTTTGCTGGCAGGCTTGAATTTGGATTGGATAACTGCATAACCATTAAAGAAAACCAATTACTTGCACCAACAGGACACAAAGGAGCTATTACTGCTCTCACCTTCAGTCAAATGGATCTAATTTCTGCATCTGAGGATTGCACTGTCTGCATATGGGACATCAGGAGTCAGAGGATCAAACAAAAGCTTGACCACAAAAAAGGAAGAATAACCAACTTGGTAGCAATTCCACGGTCTTCTCTGAGCTCTATGTCGAACCGTAAGAGAGTCTCGAACCATTTCTCGATGTCTTCACTCGACAAGTATCCTCAACCAGCCAACTTGTCGGCGAGCACAATCCCTCTCTTTCCCTCTCTCCAACCCCTCAGGGAGAATCCGAATTCCATTGGATTCACAAGTACTGGTTCATTGAATCAGCAAATATTTGATATGAAGACAGAAACCACATCAGCAGCAATACAGATGAAAGTAGAAACAAGTTTAGAGAGACGATTGTGGGCTTCGAGAATGACAAAGCAAGTAATGGAGATGAACAACCATCTTCAATCACGGTTGCTAGACATGATGCGGGTCCGATTAAACGAAAAAGATGAAAGCGATCGAGTTGCAAGGATGAGAGAGAAGCATCCATTGTCATTCCATTGA 1368 43.93 MALAVCSDKNMGSGITIWDSKTGETLLRIPTCASPPYGLIFLRNEFLVASQTRKEGSVGGGSIFIWSLNKPQSPITSYPLEPIGPLTSTKDSVYLAGGAHSGNIHLWEVGSGKLLKIWSGNNKPIKCILFSWDDSFLITGSADGTICIWSMIDLLDVELVGSSQPILYRLMEHKSSLTGLLTMSGCSMPMIISSSLDGSLKFWDLMSGMIRGTQTYIEGITTIVLHPTEQFIFYGTIDGKIFAGRLEFGLDNCITIKENQLLAPTGHKGAITALTFSQMDLISASEDCTVCIWDIRSQRIKQKLDHKKGRITNLVAIPRSSLSSMSNRKRVSNHFSMSSLDKYPQPANLSASTIPLFPSLQPLRENPNSIGFTSTGSLNQQIFDMKTETTSAAIQMKVETSLERRLWASRMTKQVMEMNNHLQSRLLDMMRVRLNEKDESDRVARMREKHPLSFH 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 37451537 37454645 + Sed0011561.1 Sed08g2444 724220

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2444 455 PANTHER WD-REPEAT PROTEIN 18 2 435 IPR045227 GO:0005656(PANTHER)|GO:0006261(PANTHER)|GO:0006364(PANTHER)|GO:0097344(PANTHER)
Sed08g2444 455 SMART WD40_4 163 204 IPR001680 GO:0005515(InterPro)
Sed08g2444 455 SMART WD40_4 255 294 IPR001680 GO:0005515(InterPro)
Sed08g2444 455 SMART WD40_4 111 150 IPR001680 GO:0005515(InterPro)
Sed08g2444 455 SMART WD40_4 71 108 IPR001680 GO:0005515(InterPro)
Sed08g2444 455 ProSiteProfiles Trp-Asp (WD) repeats profile. 264 303 IPR001680 GO:0005515(InterPro)
Sed08g2444 455 Gene3D - 156 427 IPR015943 GO:0005515(InterPro)
Sed08g2444 455 Gene3D - 2 155 IPR015943 GO:0005515(InterPro)
Sed08g2444 455 ProSitePatterns Trp-Asp (WD) repeats signature. 191 205 IPR019775 -
Sed08g2444 455 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 264 297 - -
Sed08g2444 455 ProSitePatterns Trp-Asp (WD) repeats signature. 281 295 IPR019775 -
Sed08g2444 455 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 6 311 IPR011047 -
Sed08g2444 455 PRINTS G protein beta WD-40 repeat signature 191 205 IPR020472 -
Sed08g2444 455 PRINTS G protein beta WD-40 repeat signature 137 151 IPR020472 -
Sed08g2444 455 PRINTS G protein beta WD-40 repeat signature 281 295 IPR020472 -
Sed08g2444 455 Pfam WD domain, G-beta repeat 112 150 IPR001680 GO:0005515(InterPro)
Sed08g2444 455 Pfam WD domain, G-beta repeat 265 294 IPR001680 GO:0005515(InterPro)
Sed08g2444 455 Pfam WD domain, G-beta repeat 170 204 IPR001680 GO:0005515(InterPro)
Sed08g2444 455 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 118 151 - -
Sed08g2444 455 ProSiteProfiles Trp-Asp (WD) repeats profile. 170 213 IPR001680 GO:0005515(InterPro)
Sed08g2444 455 ProSiteProfiles Trp-Asp (WD) repeats profile. 118 151 IPR001680 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2444 K14829 - - csv:101212515 755.362
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2444 Sed-Chr8:37451537 Sed09g0364 Sed-Chr9:3323434 1.50E-47 dispersed
Sed08g2444 Sed-Chr8:37451537 Sed05g1462 Sed-Chr5:28344623 5.20E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g138 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00493 Csa01g00955 Chy12g01177 . . . . . . . . . Sed08g2444 . . . . . . Cpe09g00968 . Bhi08g01467 Tan05g2944 Cmetu07g1959 . . . . Cla03g00346 Cam03g0364 Cec03g0353 . . Cmu03g0970 Cre03g0662 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014470 0 3 0 0 0 1 1 0 0 1 1 0 1 0 0 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 21