Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2452 ATGGCGGATCGTGATTCAAACTCCGCCGCCGCCGCCGCTGCCGCCCATTCCGCCGATCCTCGAAGCGGTTTCTGTCCGGAAACGAAGATTTTCCACAGTCTCCGACCACCGCTCTCACTTCCACCGATATCTCAGCCTCTCTCCTTAACTGAACACGCCATTTCTCTCCTCCAATCGTCTCCGCCACCTGCAAACGCCGCCGCACTCATCGACTCCACCTCCGGCGTCCGTCTCTCCTACGCCACTTTCCTCCGTCAAATCCGAACCCTAGCCGCTAATCTCAAAGCCCTAACCTCCCTCTCCAATGGTCAAGCCGCTTTCATTCTCGCACCGACTTCTCTGCAAGTTCCTGTTCTGTATTTCGCTCTGTTATCTCTCGGCGTCGTTCTCTCTCCGGCGAATCCAACCGGTTCCGATTCGGAGATCGCTCACCAGATTCGACTCTGCAAACCGGCCATTGCCTTCGCTACGACCTCAACGGCGTCAAAGCTCTCTAGGTTTCGATTCGAAACCGTATCGATCGATTCGCCAGAGTTTCTCTGTATGATGAACGAAATCAACAGATCTGACGGAAGAGGATCAAGAGATGAGGATTTAATCGATCAATCCGACGCGGCGGCGATTCTGTACTCGTCTGGAACAACCGGTCGAGTGAAAGGCGTGTTACTGAGTCATCGGAACCTCATTGCGATGAACTCCGGGCATCGCGGCGTAGATGAGGTCGATAAAGAGATGAAGCCGCAGCCGGTGTCTCTCTGTTTGCTGCCGATGTTCCATGTTTACGGATTCGTGATGTTGATTCGGGCGATTTCGCATGGGGAAACGCTGGTTCTGATGCAGAGATACGATTTCGAGGGGATGTTGAGGGCGGTGGAGAGGTTTAGGGTTTGGTTCATCCCGGTTTCGCCGCCGCTGGTGGTGGCGATGGCGAAGTCGGAGGTGGTGGCGAAGTACGATCTTAGTTCTCTCCAAGTTTTGGGATGCGGCGGCGCTCCCCTTGGGAAAGAAGTGATCCACAAATTCCATGAAAAGTTCTCCAACGTTGAAATTATTCAGGGATATGGTTTGACAGAGAGTACAGCAGGGGCAACATTGGCTCTGGGGCCTGAGGAAAACAGCAACACGAGCTCAGTAGGTCGTCTATGTGAAAATATGGAAGCCAAGATAGTAGATCCAACATCTGGACTGGCCTTACCTCCTGGCCGCAAAGGAGAGCTCTGGCTGCGAGGTCCACAAATCATGAAAGGTTACATTGGAGATGACAAAGCAACTGCTGAAACCTTGCATCCAGAGGGATGGCTAAAGACTGGCGATCTTTGCTATTTTGATTCTGATGGATATCTCTACATTGTTGATAGATTAAAAGAGTTGATCAAGTATAAGGCTTATCAGGTCCCACCTGCTGAATTGGAACATTTGCTTCAATCCCACCCCGAGATCATCGATGCTGCCGTGATACCCTACCCTGATGAAGAAGCTGGAGAGATTCCTTTGGCTTATGTTGTTAGAAAGCATGGAAGCAATATAACTGAGGCTCAAATCACTGATTTTGTTGCAAAACAGGTTGTGCCGTACAAGAAAATCCGACGAGTGTCTTTTATCAATGCAATTCCGAAATCAACTGCAGGGAAGATTCTGAGGAGAGAGCTTGTTAAACATGCTCTCTCTCATGGATCTAGCAAGTTGTAA 1689 50.5 MADRDSNSAAAAAAAHSADPRSGFCPETKIFHSLRPPLSLPPISQPLSLTEHAISLLQSSPPPANAAALIDSTSGVRLSYATFLRQIRTLAANLKALTSLSNGQAAFILAPTSLQVPVLYFALLSLGVVLSPANPTGSDSEIAHQIRLCKPAIAFATTSTASKLSRFRFETVSIDSPEFLCMMNEINRSDGRGSRDEDLIDQSDAAAILYSSGTTGRVKGVLLSHRNLIAMNSGHRGVDEVDKEMKPQPVSLCLLPMFHVYGFVMLIRAISHGETLVLMQRYDFEGMLRAVERFRVWFIPVSPPLVVAMAKSEVVAKYDLSSLQVLGCGGAPLGKEVIHKFHEKFSNVEIIQGYGLTESTAGATLALGPEENSNTSSVGRLCENMEAKIVDPTSGLALPPGRKGELWLRGPQIMKGYIGDDKATAETLHPEGWLKTGDLCYFDSDGYLYIVDRLKELIKYKAYQVPPAELEHLLQSHPEIIDAAVIPYPDEEAGEIPLAYVVRKHGSNITEAQITDFVAKQVVPYKKIRRVSFINAIPKSTAGKILRRELVKHALSHGSSKL 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 37492296 37497178 + Sed0009918.1 Sed08g2452 724228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2452 562 CDD 4CL 46 550 - -
Sed08g2452 562 Gene3D - 38 455 IPR042099 -
Sed08g2452 562 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 24 550 - GO:0016405(PANTHER)
Sed08g2452 562 ProSitePatterns Putative AMP-binding domain signature. 208 219 IPR020845 -
Sed08g2452 562 Gene3D - 456 556 IPR045851 -
Sed08g2452 562 Pfam AMP-binding enzyme 63 417 IPR000873 -
Sed08g2452 562 SUPERFAMILY Acetyl-CoA synthetase-like 65 556 - -
Sed08g2452 562 Pfam AMP-binding enzyme C-terminal domain 469 544 IPR025110 -
Sed08g2452 562 FunFam 4-coumarate--CoA ligase 2 456 557 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2452 Sed-Chr8:37492296 Sed13g2178 Sed-Chr13:26382796 3.50E-131 dispersed
Sed07g1450 Sed-Chr7:11221807 Sed08g2452 Sed-Chr8:37492296 1.10E-24 transposed
Sed01g1599 Sed-Chr1:11619951 Sed08g2452 Sed-Chr8:37492296 8.80E-235 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2452 K01904 - csv:101213796 825.083