Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2459 ATGGAAGGCCAAGAGGGAGCTCAACAGCCTCATCTCGTGCTTGCTCACAAGCTCTTCCTTCTAACTCATCCAGATGTTCAAGACATCGAGAAGGTCAATCTCAGAGACGAAGTGCTGGCCTCCGTTAAAGCTGATGATATGGCTCCTTTGTACGAAACCCTAACCGGAAATTCGCTGTTGGATTTGGATCGGAGCGTGTTGGACTCGATGCGCGCGAAAAACGAGGAGGAGTTGAAGAAGCTGGACGAGAAGATTGCTGATGCCGAAGAAAACTTAGGTGAAAGTGAAGTTCGAGAAGCTCATTTAGCCAAATCACTTTTTTTCATTCGTATTGGTGATAAGGACAGAGCGCTTGAGCAACTCAAGGTAACTGAGGGCAAAACAGTTGCAGTTGGACTTAAGATGGATCTGGTTTTCCATACTCTGCAACTTGGATTTTTCTACATGGATTTTGATCTCATCTCCAAAAGTATTGACAAAGCAAAAAAGTTGTTTGATGAAGGTGGTGATTGGGAAAGAAAGAATCGTCTGAAGGTGTATGAAGGCTTGTACTGCTTGTCCACTAGAAACTTCAAGAAAGCAGCCACCTTGTTTTTGGATTCTATCTCAACTTTCACCACATATGAACTATTTCCTTACGACACATTCATATTTTATACTGTTCTCACAAGCATTATATCATTGGATAGAGTGTCTCTAAAACAAAAGGTTGTGGATGCTCCTGAGATATTGACAGTGATTGGAAAAGTTCCTTACCTTTCTGACTTCTTGAACTCTTTGTATGACTGCCAATATAAATCATTTTTTTCAGCCTTCGCTGGTTTGACAGAACAAATAAAATTAGACCGTTACTTGCATCCACACTTCAGGTACTACATGAGAGAGGTCAGAACTGTTATTTATTCCCAGTTTTTGGAGTCCTATAAGAGTGTCACCATTGAAGCAATGGCCAAGGCATTTGGAGTATCTGTGGAATTCATTGATCTGGAACTGTCCCGTTTTATCGCTGCGGGAAAACTTCATTGCAAGATCGATAAAGTTGCAGGCGTTCTCGAAACTAATCGTCCTGATTCGAAGAATGCGCTGTACCAAGCTACCATCAAGCAAGGAGACTTCTTACTGAACCGTATCCAGAAGTTGTCTCGTGTGCTTCAGGTTAGAGTGAAATTTGAGAAGGATGTGCAGAAGCAGGAGGCAATGTGGGAGAATCAGCATGAACATGCAGCTGAGAAGATTTATGCTATGTGCTCTGAAATGGGTGGTTTCTTTCTTAAGGTTGCTCAAGTTATTGGGAAGCCGGATTTGGCCCCAGCTGCATGGGTGAAGAGGCTTGTTACACTGTGTGATCAAGCACCGGCAACACATTTTGATGCTGTTCAACATGTTGTGGAGAAAGAACTGCACAGAAGTCTTGATGAAGTCTTTGAAAAATTTGACCCGCACCCTCTTGGTTCAGCTTCAATTGCTCAGGTTCACAGAGCTAGGCTAAAGGGTGACAAGAATGATGTTGTGGTCAAGGTGCAACATCCAGGAACAGAGGATCTAATGATGACAGATATCCATAATTTGCAAGCCTTTGCTTTGTACATGCAAAAGACGGATATCAAATTCGATCTATATTCTGTAACTAAGGAAATGGAGAAACAGATCGGTTACGAATTTGACTTTGAGAGGGAGGCCAATGCTATTGAAAAGATCAGACAGTTTCTATGTAGCAACAACAAAAAGAGTCCAGTATTGGTGCCACAAGTGATACGGAATATTGTTACCAGGAGGGTTTTGGTGATGGAATACATTGATGGAATCCCAATCCTCAATCTTGGGGATGAAATAGCAAAGAGAGGCATAGATGCTAGTGGCAGGATTGCTTTAGCAGCAAAGCAGAAAATTCTGAGTAGTTTGACACTGGCATATGGGCAAATGATTTTGAAGAGTGGTTTCTTCCATGCAGATCCTCATCCAGGAAATATACTGATCTGTAAAGGCTCCGAGGTAGCATTGCTTGATTACGGGCAAGTGAAGGATCTTCCTGACCAGTTGAGGCTTGGTTATGCTAAACTTGTTCTTAGTATTGCAGATGGAGACAGCGCCGGAGTAGCCGATAGCTTTAGGGAGCTTGGGATAGATACAGTAAGCAATTGTGAAAATGTACAAGAAGAATTATTTAAGTTAGCACGAATGATGTTTGACACAAGATTACCCCCTGGAAAGGTGGTGATGCAACCTTTTGCGGACGACTCTTCCATTAAGAAAGTTGGTGTTCAGTCGTTTCCGGAGGAACTCTTTTCCATACTTCGGACAATCCAAATCCTTAGAGGACTAAGTGTTGGTCTTGGGATCAACTATTCGTGCGCCGAACAATGGCGACCCATCGCTGAAGAAGCTTTGTTGGTTTCTGGTAGGAGGGTCAATACAACCCGTGAACGTGGATTCTTAACGAGATTGTTTTCGAGATCGAGATGA 2463 42.71 MEGQEGAQQPHLVLAHKLFLLTHPDVQDIEKVNLRDEVLASVKADDMAPLYETLTGNSLLDLDRSVLDSMRAKNEEELKKLDEKIADAEENLGESEVREAHLAKSLFFIRIGDKDRALEQLKVTEGKTVAVGLKMDLVFHTLQLGFFYMDFDLISKSIDKAKKLFDEGGDWERKNRLKVYEGLYCLSTRNFKKAATLFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILTVIGKVPYLSDFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMREVRTVIYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETNRPDSKNALYQATIKQGDFLLNRIQKLSRVLQVRVKFEKDVQKQEAMWENQHEHAAEKIYAMCSEMGGFFLKVAQVIGKPDLAPAAWVKRLVTLCDQAPATHFDAVQHVVEKELHRSLDEVFEKFDPHPLGSASIAQVHRARLKGDKNDVVVKVQHPGTEDLMMTDIHNLQAFALYMQKTDIKFDLYSVTKEMEKQIGYEFDFEREANAIEKIRQFLCSNNKKSPVLVPQVIRNIVTRRVLVMEYIDGIPILNLGDEIAKRGIDASGRIALAAKQKILSSLTLAYGQMILKSGFFHADPHPGNILICKGSEVALLDYGQVKDLPDQLRLGYAKLVLSIADGDSAGVADSFRELGIDTVSNCENVQEELFKLARMMFDTRLPPGKVVMQPFADDSSIKKVGVQSFPEELFSILRTIQILRGLSVGLGINYSCAEQWRPIAEEALLVSGRRVNTTRERGFLTRLFSRSR 820
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 37537479 37552740 - Sed0024107.1 Sed08g2459 724235

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2459 820 Pfam PCI domain 277 354 IPR000717 -
Sed08g2459 820 Gene3D - 7 337 - -
Sed08g2459 820 Pfam ABC1 atypical kinase-like domain 447 701 IPR004147 -
Sed08g2459 820 ProSiteProfiles PCI domain profile. 190 358 IPR000717 -
Sed08g2459 820 SUPERFAMILY Protein kinase-like (PK-like) 450 672 IPR011009 -
Sed08g2459 820 FunFam 26S proteasome regulatory subunit N7 11 337 - -
Sed08g2459 820 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 287 370 IPR000717 -
Sed08g2459 820 CDD ABC1_ADCK3-like 447 703 - -
Sed08g2459 820 SUPERFAMILY Winged helix DNA-binding domain 282 363 IPR036390 -
Sed08g2459 820 Gene3D Transferase(Phosphotransferase) domain 1 459 688 - -
Sed08g2459 820 Pfam 26S proteasome regulatory subunit RPN7/PSMD6 C-terminal helix 363 383 IPR049549 -
Sed08g2459 820 ProSiteProfiles Protein kinase domain profile. 477 820 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g2459 820 Coils Coil 67 98 - -
Sed08g2459 820 PANTHER 26S PROTESOME SUBUNIT 6 8 391 IPR019585 GO:0043161(PANTHER)
Sed08g2459 820 Pfam 26S proteasome subunit RPN7 63 236 IPR045135 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2459 K03037 - - csv:101212595 784.252
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0317 Sed-Chr4:2401861 Sed08g2459 Sed-Chr8:37537479 2.90E-37 dispersed
Sed08g2459 Sed-Chr8:37537479 Sed14g1089 Sed-Chr14:20396137 2.90E-33 dispersed
Sed03g0382 Sed-Chr3:2308134 Sed08g2459 Sed-Chr8:37537479 7.50E-30 transposed
Sed01g1593 Sed-Chr1:11541721 Sed08g2459 Sed-Chr8:37537479 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g913 . Blo16g00252 . . . Bpe13g00214 Bma06g00245 . Cmo13g00814 . . . . . . Cpe20g00328 . . . . . . . . . . . . . . . . Cone16ag0041 . . Lsi02g00475 Csa01g00933 Chy12g01194 Cme12g01617 . . Bda11g01613 . . . . . Sed08g2459 . . Cma13g00782 . Car13g00631 . . . Bhi08g01709 Tan05g2923 Cmetu12g0722 Lac10g0547 Hepe07g2153 . . Cla03g00331 Cam03g0347 Cec03g0338 Cco03g0353 Clacu03g0348 Cmu03g0954 Cre03g0647 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001915 4 2 2 2 2 1 4 2 1 2 1 1 3 2 2 3 1 6 3 1 2 2 2 2 2 1 2 2 5 2 67