Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2463 ATGATGATGGCATTAACATCCTTCAATGCGGTCTTCTTTCTCTTGTGTGCTTTTGCTTTAGCTTCTCCAATTGTAGCAGAGACGCTACCACGTCTCTTCGATAAGATCTATGCCTTTGGAGACTCATTCACAGACACTGGCAATACAAGGTCTGTATCAGGGCCAGGGGGGTTCGGCCACGTCTCTAATTCTCCTTATGGCAGTACGTTCTTTCACCACTCGACCAATCGATATTCGGATGGACGACTGGTGATCGACTTTGTAGCCGAGACATTGTCCTTGCCTTTCTTGCCACCCTACAATTATTTGAAGGGCAATGACTCCTTTCATGGGGTGAACTTTGCTGTTGCAGGATCCACTGCTATAAACCATGATTTCTTTGTCAGAAATAACCTTACCCTTAATATGACTCCTCAGTCTATCCAAACTCAGCTCCTTTGGTTCAACAAGTTCTTGGAGACTCAAGGATGTAGAGGGGCAGAGACAGAGACACAATGCAAAGCTGCATTTGATGATGCTTTGTTTTGGGTTGGTGAAATTGGAGTCAATGACTATGCTTATAAAATTGGATCTTCTATACCAGATGATACCATTCGTAAGCTCGGCGTCGCCAGCGTTACTGGAGTTTTACAGTCTCTGCTGAAGAAGGGAGCTAAATATGTGGTCGTTCAAGGCTTACCACCAAGTGGATGTCTGCCATTAGCAATGTCTCTAGCTCCGGTCAATGACCGAGACGATATCGGCTGTGTGAGGAGCCCAAACAACCAAACCTACTATCACAATGTTGCTCTCCAGGCCTCATTGCAATCTTTAAGGAGGCAGTTTCCTCAAGCTATCATCGTATATGCTGATTACTGGAACGCGTATCTAACGGTTATGAAGAATCCCAGCAAGTACAATTTCACGGAGCGGTTTAAAGCCTGCTGCGGTGTCGGTGAGCCCTACAACTTCGACATGTTTACCGTCTGTGGAATGTCTTCAGTCAGATCCTGCAAAAACCCATCGGAATACATCAACTGGGATGGAGTTCACCTCACTGAAGCCATGTATAAAGTAGTTCATGACATGTTCATTGAAGGTGGATTTACCCAGCCTCCTTTTCGGAGCTTGTTGGACATGAAACAGCATCAGGGTTAG 1137 45.47 MMMALTSFNAVFFLLCAFALASPIVAETLPRLFDKIYAFGDSFTDTGNTRSVSGPGGFGHVSNSPYGSTFFHHSTNRYSDGRLVIDFVAETLSLPFLPPYNYLKGNDSFHGVNFAVAGSTAINHDFFVRNNLTLNMTPQSIQTQLLWFNKFLETQGCRGAETETQCKAAFDDALFWVGEIGVNDYAYKIGSSIPDDTIRKLGVASVTGVLQSLLKKGAKYVVVQGLPPSGCLPLAMSLAPVNDRDDIGCVRSPNNQTYYHNVALQASLQSLRRQFPQAIIVYADYWNAYLTVMKNPSKYNFTERFKACCGVGEPYNFDMFTVCGMSSVRSCKNPSEYINWDGVHLTEAMYKVVHDMFIEGGFTQPPFRSLLDMKQHQG 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 37573080 37575147 - Sed0010331.1 Sed08g2463 724239

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2463 378 SUPERFAMILY SGNH hydrolase 35 358 - -
Sed08g2463 378 Pfam GDSL-like Lipase/Acylhydrolase 36 355 IPR001087 GO:0016788(InterPro)
Sed08g2463 378 Gene3D SGNH hydrolase 28 360 IPR036514 -
Sed08g2463 378 PANTHER ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN 17 357 - -
Sed08g2463 378 CDD SGNH_plant_lipase_like 36 360 IPR035669 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2463 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2463 Sed-Chr8:37573080 Sed11g0381 Sed-Chr11:3647459 3.00E-57 dispersed
Sed03g2949 Sed-Chr3:46449799 Sed08g2463 Sed-Chr8:37573080 1.30E-38 transposed
Sed06g1219 Sed-Chr6:35506079 Sed08g2463 Sed-Chr8:37573080 1.20E-39 transposed
Sed01g1586 Sed-Chr1:11520390 Sed08g2463 Sed-Chr8:37573080 8.30E-193 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g899 . . . . . . . . Cmo13g00810 Cmo18g00188 . . . . . Cpe20g00332 . . . . . . . . . . . . . . . Cone2ag0952 Cone16ag0048 . . . Csa01g00925 . Cme12g01625 . . . . . . . . Sed08g2463 . . Cma13g00778 Cma18g00212 . Car18g00204 Cpe09g00986 . Bhi08g01699 Tan05g2902 Cmetu12g0903 Lac10g0540 Hepe07g2160 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009369 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34