Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2464 ATGGCGTCGCAGGACAAGGGTCGACCACTGCCAAAGTTTGGTGAATGGGACGTAAATAACCCTGCATCTGCAGAAGGATTTACGGTCATATTTAACAAGGCTAGAAATGAGAAGAAAACAACCACTGGAACTCCTCTCAATATGGTTTCACCACAAAGTAATGAACCAATCTATAACAATGAAAGCTACCCTCATTCTCCTCCACGCAAGAAAAAGTGGTTTTGCTGTGGTTGA 234 43.16 MASQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTTGTPLNMVSPQSNEPIYNNESYPHSPPRKKKWFCCG 77
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 37578260 37579561 + Sed0025558.1 Sed08g2464 724240

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2464 77 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 4 76 IPR040387 GO:0005886(PANTHER)
Sed08g2464 77 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 5 40 IPR008700 -
Sed08g2464 77 MobiDBLite consensus disorder prediction 38 61 - -
Sed08g2464 77 MobiDBLite consensus disorder prediction 38 77 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2464 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1582 Sed-Chr1:11513967 Sed08g2464 Sed-Chr8:37578260 7.60E-29 dispersed
Sed05g3049 Sed-Chr5:40859770 Sed08g2464 Sed-Chr8:37578260 3.50E-18 dispersed
Sed06g1716 Sed-Chr6:41890057 Sed08g2464 Sed-Chr8:37578260 3.10E-10 dispersed
Sed07g2758 Sed-Chr7:42638882 Sed08g2464 Sed-Chr8:37578260 2.10E-14 dispersed
Sed08g2464 Sed-Chr8:37578260 Sed09g0932 Sed-Chr9:30495401 9.80E-08 dispersed
Sed08g1446 Sed-Chr8:28970185 Sed08g2464 Sed-Chr8:37578260 5.60E-18 transposed
Sed01g1581 Sed-Chr1:11513967 Sed08g2464 Sed-Chr8:37578260 1.10E-30 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g894 . . . . . . Bma06g00243 . . . . . . . . . . . . . . . . . . . . . . . . . Cone16ag0050 . . . . . . . . . . . Bpe15g00666 . . Sed08g2464 . . . . . Car18g00203 . . Bhi08g01696 Tan05g2899 Cmetu12g2048 Lac10g0538 . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000283 4 7 1 2 4 5 8 5 5 5 5 5 8 3 5 7 1 5 8 0 5 5 5 1 5 5 4 9 5 4 141