Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2465 ATGGAATCTTCTGAAGCTCTTTCCGTCACTAATCACTGTGAATCACCTGATTCTTCCTCTCAATCTTCACAGTTTCATGCCTCTTCTGTTCTTGATCCTGCACCATCCGATTCACAGCACGATTTGATCCATGCAGAGCTTCAGAATTTGGATTTGAAGGATGAGAAAGAGGAGGCGGTGAAGGATTATGAACAAGGATGGGAAGTTGACAAGAATCCTGGTGAAGATGAAGGAAATGCGCCGAAGAGGATCGACGGGAATGATCGATTTAGAAGCTTTAGGAATGAGGATGACGACGAAGATGAAGATGAGGAGGTAGATGCCGGCGACGGCGGCGGCGATGGCGGCGATGTGGAGAAGAAATGGGGAATTAGGGCAAAAATCAACCAGTATCCGGTACGGCCCGAGGCTGAGGATTGTGCCTTTTACATTAAGACTGGGACTTGCAAGTTTGGATCATTTTGCAAATTCAATCACCCTATGCCAAAGAGAAACCAGGTTGTTTCTGAGAAATTGAAGTATGAGCATGATTCATCTGGGCAGGCGAGCAAGACAGAATGCAAGTTTTACTTAACGACCGAGGGTTGCAAATTTGGAAAAGCCTGTAGATATAACCACACAAGACCCAGAGCATTGGTAAACCCAATTCTAGAGCTGAACTTCCTTGGTCTGCCAATCCGTCCAGACGAAAAAGAATGCCCCTATTACATGCGAACAGGATCCTGTAAATATGGTGCAAACTGCAGGTTTAATCATCCTGATCCCACAACTGTTGCTGTACCCAAATCTCCAACGGGATATAAGAATACTGGAGTTCCCCTACAAGGTGCATCACAATCACAGATCACATCCTGGACTTCACCAAGAGTGCTGAATGAAACAGCAACATTTGTACCTGCTATTATTTCACCTTCTCAAGATTCAGAATGGAATGCATACCAGGCTCCAATGTACCCATCAGAAATCAGCTTGCTTCCGCCTCCAACATATGTCGTGAACAACATAGCATCTGAGACAAATCTGTATCCTTCTCATCTGCAAGTGAAAGAATATCCCGAACGACCTGGTCAACCCGAATGCAGTTACTTTCTAAAGACGGGAGATTGTAAATTTAAATTGCATTGCAAATATCACCATCCGAAGAATCGGAACTCAAAATTACCAGCCTGCACTCTCAATGAAAAAGGCCTGCCTTTGAGACCTGATCAGAACGCATGCACGTATTACAGTAACTACGGCATCTGCAAGTTCGGGCCATCTTGCAAGTTTGACCATCCTATTCTTCCCGCTTCTACAACCGCAAGCGAGCTTGAACAGCAGCCTCACTATGGCAACTTCACTGCCACAGAAGGAGCTGAAATGGGAGCAGGAGCGAGCGGAAACAGTGCCCCGGTTGAGCAGTCTGCCTAA 1410 45.82 MESSEALSVTNHCESPDSSSQSSQFHASSVLDPAPSDSQHDLIHAELQNLDLKDEKEEAVKDYEQGWEVDKNPGEDEGNAPKRIDGNDRFRSFRNEDDDEDEDEEVDAGDGGGDGGDVEKKWGIRAKINQYPVRPEAEDCAFYIKTGTCKFGSFCKFNHPMPKRNQVVSEKLKYEHDSSGQASKTECKFYLTTEGCKFGKACRYNHTRPRALVNPILELNFLGLPIRPDEKECPYYMRTGSCKYGANCRFNHPDPTTVAVPKSPTGYKNTGVPLQGASQSQITSWTSPRVLNETATFVPAIISPSQDSEWNAYQAPMYPSEISLLPPPTYVVNNIASETNLYPSHLQVKEYPERPGQPECSYFLKTGDCKFKLHCKYHHPKNRNSKLPACTLNEKGLPLRPDQNACTYYSNYGICKFGPSCKFDHPILPASTTASELEQQPHYGNFTATEGAEMGAGASGNSAPVEQSA 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 37580438 37585199 - Sed0021120.1 Sed08g2465 724241

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2465 469 Pfam RNA-binding, Nab2-type zinc finger 187 206 - -
Sed08g2465 469 Coils Coil 42 62 - -
Sed08g2465 469 SUPERFAMILY CCCH zinc finger 399 426 IPR036855 GO:0046872(InterPro)
Sed08g2465 469 MobiDBLite consensus disorder prediction 97 112 - -
Sed08g2465 469 ProSiteProfiles Zinc finger C3H1-type profile. 134 162 IPR000571 GO:0046872(InterPro)
Sed08g2465 469 ProSiteProfiles Zinc finger C3H1-type profile. 354 382 IPR000571 GO:0046872(InterPro)
Sed08g2465 469 SUPERFAMILY CCCH zinc finger 228 255 IPR036855 GO:0046872(InterPro)
Sed08g2465 469 Gene3D - 116 175 - -
Sed08g2465 469 MobiDBLite consensus disorder prediction 434 469 - -
Sed08g2465 469 MobiDBLite consensus disorder prediction 44 96 - -
Sed08g2465 469 Gene3D - 344 428 - -
Sed08g2465 469 PANTHER PROTEIN PHOSPHATASE RELATED 28 428 IPR050974 GO:0003729(PANTHER)
Sed08g2465 469 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 229 253 IPR000571 GO:0046872(InterPro)
Sed08g2465 469 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 403 426 IPR000571 GO:0046872(InterPro)
Sed08g2465 469 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 355 381 IPR000571 GO:0046872(InterPro)
Sed08g2465 469 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 138 161 IPR000571 GO:0046872(InterPro)
Sed08g2465 469 ProSiteProfiles Zinc finger C3H1-type profile. 227 255 IPR000571 GO:0046872(InterPro)
Sed08g2465 469 ProSiteProfiles Zinc finger C3H1-type profile. 400 428 IPR000571 GO:0046872(InterPro)
Sed08g2465 469 SMART c3hfinal6 400 427 IPR000571 GO:0046872(InterPro)
Sed08g2465 469 SMART c3hfinal6 134 161 IPR000571 GO:0046872(InterPro)
Sed08g2465 469 SMART c3hfinal6 229 254 IPR000571 GO:0046872(InterPro)
Sed08g2465 469 SMART c3hfinal6 182 208 IPR000571 GO:0046872(InterPro)
Sed08g2465 469 SMART c3hfinal6 354 381 IPR000571 GO:0046872(InterPro)
Sed08g2465 469 SUPERFAMILY CCCH zinc finger 134 165 IPR036855 GO:0046872(InterPro)
Sed08g2465 469 Gene3D - 176 265 - -
Sed08g2465 469 MobiDBLite consensus disorder prediction 1 121 - -
Sed08g2465 469 ProSiteProfiles Zinc finger C3H1-type profile. 181 209 IPR000571 GO:0046872(InterPro)
Sed08g2465 469 MobiDBLite consensus disorder prediction 1 35 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2465 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2465 Sed-Chr8:37580438 Sed12g0847 Sed-Chr12:5223649 2.80E-12 dispersed
Sed01g1580 Sed-Chr1:11508656 Sed08g2465 Sed-Chr8:37580438 1.80E-138 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g893 Blo04g00708 Blo16g00248 . . . Bpe13g00218 Bma06g00242 . Cmo13g00808 Cmo18g00184 . . . . . Cpe20g00333 . . . . . . . . . . . . . . . Cone2ag0950 Cone16ag0051 . . Lsi02g00466 Csa01g00921 Chy12g01205 Cme12g01626 . . Bda11g01626 Bda14g00777 . Bpe15g00167 Bma03g00756 . Sed08g2465 . . Cma13g00777 Cma18g00208 Car13g00625 Car18g00202 Cpe09g00988 . Bhi08g01694 Tan05g2898 Cmetu12g0034 Lac10g0537 Hepe07g2163 . . Cla03g00322 Cam03g0338 Cec03g0330 Cco03g0344 Clacu03g0340 Cmu03g0946 Cre03g0639 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004285 3 1 3 2 2 1 2 1 1 1 1 1 1 1 1 1 1 3 2 1 1 1 1 1 1 2 1 2 1 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39443 PF00642 zf-CCCH 1.00E-07 CL0537 Sed TF