Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2466 ATGGTCTCACATTTTCAGTTGCTATATGATCTTGCTCTAAGTTCTAGAGCACCTCTGTGCACTGGTGCTCAACCAAGAAGCTCACGACTAAAAGATAAAAGAAGGGGTGAAGGGGAAGCAGTTATAAAAGAGCTATTTGTACAGAATATTGTTGAAAATAACAGCCTGTTGGACACTCTCGGAAGGGGAGCTTCAGTTGTACTTCTTCCCCAAGGTTCTTTAGATTCTATATATTCGAGACTGCGCGTTGGATCCCACTTGAGAGCAAAACCTAGATTTCCTGCTGGTTTTTGCAATTCTAAGGAAGAAGCCAAATCTCCTCAAAGTTTTGATTATGATAATCTCACACTAGAAAACAGCCAGGGAATGAGCCGAGTTAAAGGTTTCCATTCAGCTAGGGGACCATATTCTTCTCTATCTGAGAGAAGCATGGGTAATTTATGTGCTTCAAGTTCTAGGACTTCGAATGCCAACAATGAACAAGGAGGCAGCATTCATTGCGATGGATTATCAGACCAAAGACTGTTTTCGTGTGTCACGTGTGGTATATTAAGCTTTGCCTGTGTAGCCATCATCCAACCCAAAGAACAAGCTGCTAGGTACCTTATGTCAGCTGACTGTAGCTTCTTCAACGATTGGGTTGTTGGTTCTGGGATAACCAGAGAAGGGATTGATATAAGAGATGGGCATGCTGTTAGTAATAGTGGAAAAAGAGAAAGGTGTGGCTCTGATGGATTGTATGACGTCCCCGTCCAGGCTGTCGATCACCAGCTTCCAATAGCAGATCAAAGTTATGAAGCTAATTTTAATACTGAAAAGCGGAATGAGACTTCTGCCCTTGGCATGCTGGCATTGGCTTATGGACATTCTTCTGATTCTGAGGAGGATAATGTTTTGGATGCGGATGATGCTAAACTAATGACTTGTTCTTCAGAAGACCACTATCAGTTTGAGAATTTGGGTCTTACTTCTACTGAATATTGTAAAAACAGTGCAACTTTGAATCATGATCCCTCGTCAGTAGATCAAATGCACTTTCAAGACAATGACTCTGAAGAATTTGAACGAACTAGATTTGATTCCAAAGACTCATTCAATTGTTCTTCTGAGTTTGAAATTGATGGCATAGGTTCAACTCAGAGAAATGGCTTGTCAACTAGATATCAAGATTCACATGTGAATGGAAAATCTTCCTTAGATGCTGATACTGAAAAACTTGACAAGTCTACTGAACCGGTGGAGATTGATAAGATGCCATTTGCTCCAGATATCGATGAAGACTCCTCTAGGTTGCATGTATTCTGTCTAGAGCATGCAAAAGAAGTGGCACAACAACTTCGCCCAATTGGAGGAGTGCATATTCTTTTACTTTGTCATCCAGACTATCCGAAGATGGAGGCAGAAGCAAAACTGATGGCACAAGAATCAAGTATTGACCATCTGTGGACTGATACGATGTTCAGAGATTCCACCCAAGATGAAGAAAAGAAGATTCAGTTAGCTTTAGATAGCGAGGACGCAAACCCAGGTAATGGAGATTGGGCTGTAAAGTTGGGAATTAATCTCTTCTATAGTGCCAACCTTAGTCACTCTCCTCTTTATAGTAAGCAGATGGCATACAACTCTGTTATTTATAACGCATTTGGCCGTAGTACTTCTGCTAACTCTTCCGATAAGCCGAAAGTCTATCAAAGGAGGTCTGGCAAGCTGAAAAGGGTAGTTGCAGGTAAATGGTGTGGTAAAGTTTGGATGTCAAATCAAGTTCATCCTTTGCTAACAAAGAGAGATCCCCAAGAAGAAGATGTAGACATCTTCCCTTCTTGGACAATGTCGGATGAGAAGATTGATAGGAAACCGGAAACTATCCAGAAAAATGAGACTGTTACAAGAAAGTCCGCTGGCAAGAGAAAAATGACTTATGGGAGCAGGGCGACTAAGAAAGTCGAACCTATCGTGTCGGAGGACTTTGTTTCAGATTACTCAGGTGAAGATTATCCTCATCAGCATCATAGGATTCTACAAAACAAGCGATCTAAATTTGTCGAGAGCAATGATGCTATGTCAGATTATTCTGTGGAGGAAGATTCTTATAGAAAACAGGGAGTTCCCGTTAGCGAGGGAGCTTATTGTGAGACAGATGGCTCTGGTTCAGATGATTCTCTCAGAGATCGTCTTAACCAGCATCATAGAGGGTTCTGTGGATTCAAGCTGCCCAAATGGGGTGAGATTCAACCTTCACTTTCTGATGATTCCTTAGAGCACAATTCTTCTCAACATCGCGGGAAAAAGAGTACAAGCAAGATCGAAAAATATATTGAGAGACAAGATGCCCTTTCGGATGAGTGTTTGGAGAGTCCTCTTAAGCAATACCGAAGAAGGGTTCCAATAAGCAAGCAAACCAAAGTTCTTAAAAAGAATGCCATTGCACATGATATACAGGATGATAGTTTTCTTTGGCATCATCAAAGGACTTCTAGAAGCAAGATGGCTACTATCGATAGTGAAGATGCAGTTTTGGAGGACTACCTCGAAAATAACTCTCATCAGCATCGGAATATGCCTCGAGGCAAACTGGCCAAACGCACTGCAAGGGAAAATGTATTTTCAGATGATCCAGATGAAGATGATAATTCCCTTCTGCACCATAGAAACATTATAAGAAATGTGCAATCCAAAGACAATGATAGAGAAAATACATCAGACGACCAACTTGATGATAGTGCTAGTCTGTGCAGGAGGGTACTTCGAAGTAAGCCGGTTAAGACAGAGACAATATCTCAAATGAAACAAGAGATTCTACGACCTGCAAAGCGGAGAGCCTCTCAATCTTCGAAAGATGAATTCTCTCAACCTCTAAAACGTGGAGGCCGCCATACCTTAAAACTAGAGACCCCTCAGCCAGCCAAAAAACGTGCTGCAAGCCAGCGCAGTAAGCAAGCTAAGAGGAATGGTAAATTGACTGATTTAGAATCAGAGGAAGAGCAATCCGGTGGACCTAGCACACATCTTAGAAAAAGAAATCCAAAGCCTTCTAAACTTTCAGAAGCTAAACTGAAAGATAAAAAACCAGTGGGTAAGAAAAAGGTGAAGAATGTGAAAATTCCAGCTGGCCATAGAGATTCAAAAGCAGGGGATGAAGAATTAGAATATCTTTGTGATATCGAGGGCTGCAATATGAGTTTTCGTTCGAAGCAAGAACTTTCCTTGCACAAACGAAACATTTGCCCTGTCAAGGGGTGTGGAAAGAAGTTTTTCTCACACAAGTACCTTGTGCAGCATCGTCGAGTACACATGGACGATCGTCCACTCAAATGTCCATGGAGGGGCTGCAAGATGACTTTCAAATGGGCATGGGCACGAACAGAACATATTCGGGTTCACACAGGTGCTCGACCTTATGTTTGTGCCGAACCAGGATGCGGTCAAACATTCAGATTTGTGTCAGATTTCAGTCGTCACAAGCGGAAGACTGGACATTCAACTAAAAAAGGTAGAGGTTAA 3501 41.85 MVSHFQLLYDLALSSRAPLCTGAQPRSSRLKDKRRGEGEAVIKELFVQNIVENNSLLDTLGRGASVVLLPQGSLDSIYSRLRVGSHLRAKPRFPAGFCNSKEEAKSPQSFDYDNLTLENSQGMSRVKGFHSARGPYSSLSERSMGNLCASSSRTSNANNEQGGSIHCDGLSDQRLFSCVTCGILSFACVAIIQPKEQAARYLMSADCSFFNDWVVGSGITREGIDIRDGHAVSNSGKRERCGSDGLYDVPVQAVDHQLPIADQSYEANFNTEKRNETSALGMLALAYGHSSDSEEDNVLDADDAKLMTCSSEDHYQFENLGLTSTEYCKNSATLNHDPSSVDQMHFQDNDSEEFERTRFDSKDSFNCSSEFEIDGIGSTQRNGLSTRYQDSHVNGKSSLDADTEKLDKSTEPVEIDKMPFAPDIDEDSSRLHVFCLEHAKEVAQQLRPIGGVHILLLCHPDYPKMEAEAKLMAQESSIDHLWTDTMFRDSTQDEEKKIQLALDSEDANPGNGDWAVKLGINLFYSANLSHSPLYSKQMAYNSVIYNAFGRSTSANSSDKPKVYQRRSGKLKRVVAGKWCGKVWMSNQVHPLLTKRDPQEEDVDIFPSWTMSDEKIDRKPETIQKNETVTRKSAGKRKMTYGSRATKKVEPIVSEDFVSDYSGEDYPHQHHRILQNKRSKFVESNDAMSDYSVEEDSYRKQGVPVSEGAYCETDGSGSDDSLRDRLNQHHRGFCGFKLPKWGEIQPSLSDDSLEHNSSQHRGKKSTSKIEKYIERQDALSDECLESPLKQYRRRVPISKQTKVLKKNAIAHDIQDDSFLWHHQRTSRSKMATIDSEDAVLEDYLENNSHQHRNMPRGKLAKRTARENVFSDDPDEDDNSLLHHRNIIRNVQSKDNDRENTSDDQLDDSASLCRRVLRSKPVKTETISQMKQEILRPAKRRASQSSKDEFSQPLKRGGRHTLKLETPQPAKKRAASQRSKQAKRNGKLTDLESEEEQSGGPSTHLRKRNPKPSKLSEAKLKDKKPVGKKKVKNVKIPAGHRDSKAGDEELEYLCDIEGCNMSFRSKQELSLHKRNICPVKGCGKKFFSHKYLVQHRRVHMDDRPLKCPWRGCKMTFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHSTKKGRG 1166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 37587657 37595149 - Sed0007345.1 Sed08g2466 724242

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2466 1166 MobiDBLite consensus disorder prediction 867 905 - -
Sed08g2466 1166 PANTHER ZINC FINGER PROTEIN ZIC AND GLI 806 1161 IPR050329 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Sed08g2466 1166 ProSitePatterns Zinc finger C2H2 type domain signature. 1135 1159 IPR013087 -
Sed08g2466 1166 ProSiteProfiles Zinc finger C2H2 type domain profile. 1103 1132 IPR013087 -
Sed08g2466 1166 FunFam Probable lysine-specific demethylase ELF6 1100 1129 - -
Sed08g2466 1166 MobiDBLite consensus disorder prediction 1008 1022 - -
Sed08g2466 1166 FunFam Probable lysine-specific demethylase ELF6 1130 1159 - -
Sed08g2466 1166 ProSitePatterns Zinc finger C2H2 type domain signature. 1105 1127 IPR013087 -
Sed08g2466 1166 ProSiteProfiles Zinc finger C2H2 type domain profile. 1133 1164 IPR013087 -
Sed08g2466 1166 SUPERFAMILY beta-beta-alpha zinc fingers 1073 1110 IPR036236 -
Sed08g2466 1166 ProSitePatterns Zinc finger C2H2 type domain signature. 1075 1097 IPR013087 -
Sed08g2466 1166 MobiDBLite consensus disorder prediction 378 410 - -
Sed08g2466 1166 SUPERFAMILY beta-beta-alpha zinc fingers 1113 1157 IPR036236 -
Sed08g2466 1166 Gene3D Classic Zinc Finger 1130 1159 - -
Sed08g2466 1166 MobiDBLite consensus disorder prediction 981 1000 - -
Sed08g2466 1166 MobiDBLite consensus disorder prediction 932 965 - -
Sed08g2466 1166 ProSiteProfiles Zinc finger C2H2 type domain profile. 1073 1102 IPR013087 -
Sed08g2466 1166 MobiDBLite consensus disorder prediction 378 396 - -
Sed08g2466 1166 MobiDBLite consensus disorder prediction 921 1040 - -
Sed08g2466 1166 SMART c2h2final6 1133 1159 IPR013087 -
Sed08g2466 1166 SMART c2h2final6 1050 1072 IPR013087 -
Sed08g2466 1166 SMART c2h2final6 1103 1127 IPR013087 -
Sed08g2466 1166 SMART c2h2final6 1073 1097 IPR013087 -
Sed08g2466 1166 Gene3D Classic Zinc Finger 1075 1100 - -
Sed08g2466 1166 Gene3D Classic Zinc Finger 1101 1129 - -
Sed08g2466 1166 MobiDBLite consensus disorder prediction 746 766 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2466 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1579 Sed-Chr1:11496775 Sed08g2466 Sed-Chr8:37587657 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g892 . . . . . . . . . Cmo18g00183 . . . . . Cpe20g00334 . . . . . . . . . . . . . . . Cone2ag0949 Cone16ag0052 . . Lsi02g00464 Csa01g00920 Chy12g01206 Cme12g01627 . . . . Bpe07g00876 . . . Sed08g2466 . . . Cma18g00207 Car13g00624 Car18g00201 Cpe09g00989 . Bhi08g01693 Tan05g2897 Cmetu10g1062 Lac10g0536 Hepe07g2164 . . Cla03g00321 Cam03g0337 Cec03g0329 Cco03g0343 Clacu03g0339 Cmu03g0945 Cre03g0638 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008005 0 1 1 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39444 None None None None Sed TF