Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2468 ATGGCAATGGATAGACATGATAAGGAGAAGGAAATGGCTTCAGTTCTGCTTTCAGCTTTATATGCTGATGTTATTAGTCCTGCACATATAAGAGATGGATTTTTTATGCTACTTGAATCTGCCGATGATCTTGCTGTGGATATATTGGATGCAGCTGATATCCTTGCTTTGTTCTTAGCTCGCGCTGTCGTTGATGACATACTTCCCCCAGCATTTCTTGCCAGGGCAAGGAAGGCATTGCCGGAATCATCGAAAGGAGCTCATGCTCTCCAAATGGCTGAGAAGAGCTACCTCTCTGCTCCACATCATGCAGAACTTGTGGAGAAAAGATGGGGAGGCAGCACACACTTTACAGTAGAGGAAGTGAAGAAAAAGATTGCTTATCTATTAAGGGAATATGTTGAGAATCGAGATACTTTTGAGGCCTGCAGATGCATCAGACAGTTGGGTGTTTCATTCTTTCATCACGAGGTCGTGAAGAGGGCTTTAATTCTTGCCATGGAGACTCGATCAACAGAACCCCTGATACTGAAACTTCTGAAGGAAGCTGCTGAGGAAGGTCTGATAAGTTCAAGTCAAATGGTTAAGGGGTTCTCTCGTCTGGCAGAGAGCCTTGATGATCTTGCTCTTGATATTCCATCGGCGAAGTCTTTGTTTGAATCCTTGATCCCAAGGGCCATATCTGAAGGATGGCTTGATGCTTCCTTCATTAAATCTTCAGATGAAAATGTGGATGTTGGATCTAAAGATAAAAAGTTAAGACGCTATAAAGAAGAGGTTGTGACTATTATTCATGAGTATTTTCATTCAGATGACATTCCTGAATTAATACGAAGCCTAGAAGATCTCGGTGCACCCGAGTATAATCCAATCTTTTTGAAGAAACTGATTACACTTGCAATGGATAGGAAGAACAGAGAAAAAGAAATGGCTTCAGTGCTTCTTTCAGCTCTGCATATTGAGATATTCTCTACAGAGGATATAGGCGATGGTTTTGTGATGCTACTCGAGTCTGCAGAAGATACGGCGCTAGACATTTTGGATGCATCAAATGAGCTTGCTCTCTTTCTAGCCAGAGCTGTGATTGACGATGTCTTGGCTCCTCTGAATCTTGAGGATATTACTTGCAGGCTGACCCCAAATTGTACTGGAAGTGAGACCGTGCGAATGGCCCGGTCGTTAATTGCAGCTCGTCATGCTGGTGAGAGACTTCTGCGATGCTGGGGTGGTGGAACGGGTTGGGCAGTGGAGGATGCAAAGGACAAGATCCAGAAGCTCTTGGAGGAGTACGAAAGTGGAGGAGTTGTGAGTGAAGCTTGCCAGTGCATCCGTGATCTAGGGATGCCGTTCTTCAACCACGAGGTTGTGAAGAAGGCATTGGTTATGGCAATGGAGAAGAAGAATGACAGGATTCTAGATCTGCTGCAGGAATGCTTCAATGTGGGTCTGATCACCATCAACCAGATGACAAAAGGCTTCTCTAGGATCAACGACAGCCTCGACGATCTGGCTCTCGACATTCCAAATGCGGGCAAGAAGTTTACTTTCTATGTGGAGCACGCCCAGAAGAAAGGATGGCTCTTACCATCCTTCGGATCATCTGCTGCAGCTTCCTGA 1617 44.96 MAMDRHDKEKEMASVLLSALYADVISPAHIRDGFFMLLESADDLAVDILDAADILALFLARAVVDDILPPAFLARARKALPESSKGAHALQMAEKSYLSAPHHAELVEKRWGGSTHFTVEEVKKKIAYLLREYVENRDTFEACRCIRQLGVSFFHHEVVKRALILAMETRSTEPLILKLLKEAAEEGLISSSQMVKGFSRLAESLDDLALDIPSAKSLFESLIPRAISEGWLDASFIKSSDENVDVGSKDKKLRRYKEEVVTIIHEYFHSDDIPELIRSLEDLGAPEYNPIFLKKLITLAMDRKNREKEMASVLLSALHIEIFSTEDIGDGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEDITCRLTPNCTGSETVRMARSLIAARHAGERLLRCWGGGTGWAVEDAKDKIQKLLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALVMAMEKKNDRILDLLQECFNVGLITINQMTKGFSRINDSLDDLALDIPNAGKKFTFYVEHAQKKGWLLPSFGSSAAAS 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 37601902 37606324 - Sed0025036.2 Sed08g2468 724244

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2468 538 SUPERFAMILY ARM repeat 118 239 IPR016024 -
Sed08g2468 538 FunFam Programmed cell death protein 4 107 243 - -
Sed08g2468 538 Gene3D - 406 534 - -
Sed08g2468 538 Gene3D - 107 242 - -
Sed08g2468 538 ProSiteProfiles MI domain profile. 121 242 IPR003891 -
Sed08g2468 538 SUPERFAMILY ARM repeat 1 115 IPR016024 -
Sed08g2468 538 ProSiteProfiles MI domain profile. 1 78 IPR003891 -
Sed08g2468 538 SUPERFAMILY ARM repeat 253 411 IPR016024 -
Sed08g2468 538 ProSiteProfiles MI domain profile. 255 376 IPR003891 -
Sed08g2468 538 SMART ma3_7 419 528 IPR003891 -
Sed08g2468 538 SMART ma3_7 256 367 IPR003891 -
Sed08g2468 538 SMART ma3_7 1 69 IPR003891 -
Sed08g2468 538 SMART ma3_7 122 233 IPR003891 -
Sed08g2468 538 FunFam programmed cell death protein 4 247 399 - -
Sed08g2468 538 FunFam Programmed cell death protein 4 404 537 - -
Sed08g2468 538 Pfam MA3 domain 1 69 IPR003891 -
Sed08g2468 538 Pfam MA3 domain 420 527 IPR003891 -
Sed08g2468 538 Pfam MA3 domain 122 233 IPR003891 -
Sed08g2468 538 Pfam MA3 domain 257 366 IPR003891 -
Sed08g2468 538 SUPERFAMILY ARM repeat 415 532 IPR016024 -
Sed08g2468 538 Gene3D - 251 398 - -
Sed08g2468 538 Gene3D - 1 99 - -
Sed08g2468 538 PANTHER PROGRAMMED CELL DEATH 4 1 531 IPR039778 GO:0045892(InterPro)
Sed08g2468 538 ProSiteProfiles MI domain profile. 418 537 IPR003891 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2468 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1574 Sed-Chr1:11459754 Sed08g2468 Sed-Chr8:37601902 8.80E-281 dispersed
Sed08g2467 Sed-Chr8:37601902 Sed08g2468 Sed-Chr8:37601902 6.70E-305 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g883 Blo04g00711 Blo16g00247 . . . . Bma06g00241 . Cmo13g00804 Cmo18g00181 . . . . . Cpe20g00337 . . . . . . . . . . . . . . . Cone2ag0946 Cone16ag0054 Cone13ag0195 Cone19ag0188 Lsi02g00460 Csa01g00918 . Cme12g01630 . . Bda11g01627 Bda14g00784 . Bpe15g00662 . . Sed08g2468 . . Cma13g00774 Cma18g00205 Car13g00620 Car18g00200 Cpe09g00991 . Bhi08g01687 Tan05g2890 Cmetu12g0918 Lac10g0533 Hepe07g2167 . . Cla03g00317 Cam03g0335 . . Clacu03g0336 Cmu03g0942 Cre03g0636 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003831 3 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 2 1 45