Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2470 ATGGAATCCGTTCCGCCCATCACCACCGCCCTTCCCGACGACCTCTACTGTACATTCCCGGCCGCCGCCTCCTCCTCCGATCAGTCCATTCCGCCGTCGATATGCAGGGAGCTTCCTGAACCTGACATCCAAATCCTCGCCTCCGACGGACTCCGGATCCCGGCGCATTCTGGTATTCTGGCTTCGATTTCGCCGGTCCTCGAGCACGTCATCCATCGGCCGCGGAAGAAACGGAACGCCGAGAATGTGATTTCGATCCTTGGAGTTCCGTCGGATGCGGTTGTTTCGTTCGTTCGGTTTCTCTACAGTTCTTGGTGTACGGTGGAGAATCTGGAGAAACACGGAGTTCATCTAATGGCTCTGTCGCACGTTTACATGGTGCCGCAATTGAAGGCGATGTGTACGAAAGATTTGGCTCAGCGGCTTACGATCGAGAGCGTGGTCGATGTTCTGCAACTCGCGAGGCTCTGCAATGCGCCTGATCTTTATCTCAGGTGTATGAAATTTGTGGCGGATCATTTTAAGTTTGTGGAAAAAACTGAGGGATGGAAGTTCATTCAAGATCATGATCCTTGGCTTGAGCTTGATATTCTTCAGTTCATCGATGAAACCGAATCGAGGAAACAGAGGAACAGAAGAATAAGAAAAGAGAGGAAGCTATATCTAGAGCTACACGAAGCAATGGAGTGTTTAGAACACATCTGCTCAGAAGGCTGCACAATCGTCGGACCTTACCACGTGGACCCCAAAAAGGTCAAACAACCCTGCACCCACTACTCCACGTGTCACGGTATCCAGCTTCTGATCAAACACTTCGCCACGTGTAAGAAACGAATCAACGGCCAAGGATGCGGCCGCTGCAAGCGCATGTGGCAGCTCCTCAAGCTCCACGCCTCCATCTGCGACCACTCCGACTGCTGCAAAGTCCCTCTCTGCCGCAAATTCCGCTCGCCGGCCGACGACTCCGCCGTCGTCTCCGCCGCCAAGCGCAAGGACGACGCCCAGTGGAAGACCCTCGTCCGGAAAGTGGTTTCGGCTAAAGCAATTTCGTCTCTTTCCTTAACAAATAAGAAGCTGGCGGATTTGGACGACGATACGCCGATCCGCCACCGTGGGATTGGGGGTTTTAGATTACAAACGGCTCGGCGGTATAGATGA 1158 53.28 MESVPPITTALPDDLYCTFPAAASSSDQSIPPSICRELPEPDIQILASDGLRIPAHSGILASISPVLEHVIHRPRKKRNAENVISILGVPSDAVVSFVRFLYSSWCTVENLEKHGVHLMALSHVYMVPQLKAMCTKDLAQRLTIESVVDVLQLARLCNAPDLYLRCMKFVADHFKFVEKTEGWKFIQDHDPWLELDILQFIDETESRKQRNRRIRKERKLYLELHEAMECLEHICSEGCTIVGPYHVDPKKVKQPCTHYSTCHGIQLLIKHFATCKKRINGQGCGRCKRMWQLLKLHASICDHSDCCKVPLCRKFRSPADDSAVVSAAKRKDDAQWKTLVRKVVSAKAISSLSLTNKKLADLDDDTPIRHRGIGGFRLQTARRYR 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 37614422 37617576 + Sed0021827.1 Sed08g2470 724246

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2470 385 CDD BACK 143 184 - -
Sed08g2470 385 SUPERFAMILY TAZ domain 216 316 IPR035898 -
Sed08g2470 385 ProSiteProfiles BTB domain profile. 41 110 IPR000210 GO:0005515(InterPro)
Sed08g2470 385 SMART BTB_4 41 142 IPR000210 GO:0005515(InterPro)
Sed08g2470 385 Pfam TAZ zinc finger 225 312 IPR000197 -
Sed08g2470 385 Gene3D TAZ domain 215 346 IPR035898 -
Sed08g2470 385 FunFam BTB/POZ and TAZ domain-containing protein 2 215 348 - -
Sed08g2470 385 SUPERFAMILY POZ domain 42 139 IPR011333 -
Sed08g2470 385 SMART TAZ_2 218 313 IPR000197 -
Sed08g2470 385 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 36 357 IPR044513 GO:0005634(PANTHER)
Sed08g2470 385 Pfam BTB/POZ domain 42 140 IPR000210 GO:0005515(InterPro)
Sed08g2470 385 Gene3D - 141 214 - -
Sed08g2470 385 Gene3D Potassium Channel Kv1.1; Chain A 39 140 IPR011333 -
Sed08g2470 385 FunFam BTB/POZ and TAZ domain-containing protein 2 143 213 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2470 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2374 Sed-Chr1:17829778 Sed08g2470 Sed-Chr8:37614422 1.70E-107 dispersed
Sed08g2044 Sed-Chr8:34674590 Sed08g2470 Sed-Chr8:37614422 1.10E-117 dispersed
Sed08g2470 Sed-Chr8:37614422 Sed10g0713 Sed-Chr10:5003366 2.50E-67 dispersed
Sed01g1606 Sed-Chr1:11676861 Sed08g2470 Sed-Chr8:37614422 1.00E-175 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g876 . . Bda06g00628 Bda15g00529 Bpe12g00680 . Bma06g00237 Bma12g01066 Cmo13g00798 Cmo18g00179 . . . . . Cpe20g00340 . . . . . . . . . . . . . . . . . Cone13ag0191 Cone19ag0186 Lsi02g00455 Csa01g00912 Chy12g01212 Cme12g02054 . Blo15g00240 Bda11g01631 . Bpe07g00869 . . Bma08g00073 Sed08g2470 . . Cma13g00769 Cma18g00203 Car13g00983 Car18g00197 Cpe09g00993 . Bhi08g01684 Tan05g2884 Cmetu12g0322 Lac10g0529 Hepe07g2171 . . Cla03g00313 Cam03g0332 Cec03g0323 Cco03g0336 Clacu03g0333 Cmu03g0939 Cre03g0633 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001511 3 2 1 3 2 2 4 2 2 2 2 2 3 2 2 5 2 2 4 2 2 2 2 2 2 2 2 5 3 1 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39445 PF00651 BTB 2.20E-10 CL0033 Sed TR