Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2488 ATGGGAGACAACAAACGCAAAAGAGGCCGGCAGCCGAAAGATCCCAAGCCGGAGACCCTCGATTGCCCCCCGCCGACCACCGCCACCGCCGTGGACGACGTCTTCTCCGTCAGCAAGGTCGAGCTCATGGACCCTGCCTCCCCTTCCAAACACCACCACAACCGCCGTGGCCGCCCGAAGAAGCTCTCCAAACACGTCGAAAACTCCGACAAATTCCCCCAATTGTCTCCCTCTAGACGCGGCCCTCGCGAAAATGGAGATTTTACTGCTTCCGTCGAAGCCTTGCCGCCTGCCATTGTTCCGGAGTGGCCGGGCATCGCCCGAGTCGTGCCGGCCATGGACGCTGTGGTGAAGGTGTTTTGTGTGCATACGGAGCCTAATTTCTCGCTCCCTTGGCAGAGGAAGAGGCAGTATAGCTCGAGTAGTAGTGGATTTGTGATTGGTGGAAGGAGGGTTCTTACTAATGCTCATTCGGTTGAGCATTATACGCAGGTTAAGCTTAAGAAGCGTGGCTCGGATACGAAGTATTTGGCCACCGTTCTCGCGATCGGGACCGAATGCGATATCGCTTTGCTTACCGTCGATGATGATGAGTTCTGGGTGGGAGTTTCACCTGTAGAATTTGGGGAATTACCTGCTCTTCAAGATGCAGTAACTGTTGTTGGTTACCCAATTGGAGGTGATACAATTTCTGTCACAAGTGGGGTTGTGTCGCGGATAGAGATCCTATCTTATGTTCATGGGTCTACTGAGCTTCTGGGTCTGCAGATAGATGCTGCTATAAACTCTGGTAATTCTGGTGGGCCTGCCTTTAACGACAAAGGCAACTGTGTAGGCATTGCATTTCAGTCACTCAAGCATGAAGATGCTGAAAATATAGGTTATGTCATACCAACACCAGTTATCTTGCATTTCATACAAGATTACGAGAAGAATGGAGCATATACAGGGTTTCCCATTCTTGGTCTTGAGTGGCAGAAAATGGAAAATCCTGATCTTCGCGAAGCTATGGGTATGAAACAAGAGCAGAAGGGTGTCCGTATTAGGCGTATTGATCCCACCGGCCCAGAATCCAAAGTTTTGAAGCCTGCAGATATTATTCTCAGTTTTGATGGGGTTGATATTGCAAATGATGGAACAGTTCCTTTCCGGCATGGTGAGCGTATTGGTTTCAGTTATCTTGTCTCCCAGAAATATACCGGTGATAGTGCAACGATAAAAGTTCTGCGCAACTCTAAGACACTCAGTTTTACCTACCAGCTTGCAACATACAGAAGGCTCATTCCTGCACATATTGAGGGCAAACCCCCTTCTTATTACATTATTGCAGGATTTGTTTTTTCTACCGTATCAGTTCCTTATCTCCGTTCTGAGTATGGAAAGGATTACGAGTATGAAGCTCCAGTCAAACTTTTAGACAAACTACTGCATTCAATGCCACAGTCTCCAGACGAGCAGTTAGTAGTGGTTTCTCAGGTACTTGTGGCTGATATCAATATTGGATATGAAGACATTGTTAACACCCAGGTTCTTGCTTTTAATGGTAAACCTGTGAAGAACCTCAAAAGCTTGGCTAACATGGTCGAAAGTTGTGACGATGAGTTTTTGAAGTTTGATTTAGAGTATCAACAGATAGTTGTCCTCCGCACAAGTACAGCCAAAGCAGCCACTTCAGATATTCTGGCAACACACTGCATACCCTCAGCTATGTCTAACGATCTCAAAACCTAA 1731 47.26 MGDNKRKRGRQPKDPKPETLDCPPPTTATAVDDVFSVSKVELMDPASPSKHHHNRRGRPKKLSKHVENSDKFPQLSPSRRGPRENGDFTASVEALPPAIVPEWPGIARVVPAMDAVVKVFCVHTEPNFSLPWQRKRQYSSSSSGFVIGGRRVLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIGTECDIALLTVDDDEFWVGVSPVEFGELPALQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFNDKGNCVGIAFQSLKHEDAENIGYVIPTPVILHFIQDYEKNGAYTGFPILGLEWQKMENPDLREAMGMKQEQKGVRIRRIDPTGPESKVLKPADIILSFDGVDIANDGTVPFRHGERIGFSYLVSQKYTGDSATIKVLRNSKTLSFTYQLATYRRLIPAHIEGKPPSYYIIAGFVFSTVSVPYLRSEYGKDYEYEAPVKLLDKLLHSMPQSPDEQLVVVSQVLVADINIGYEDIVNTQVLAFNGKPVKNLKSLANMVESCDDEFLKFDLEYQQIVVLRTSTAKAATSDILATHCIPSAMSNDLKT 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 37755829 37761507 + Sed0022411.1 Sed08g2488 724264

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2488 576 Pfam Trypsin-like peptidase domain 143 280 - -
Sed08g2488 576 Gene3D - 427 576 IPR046449 -
Sed08g2488 576 Pfam PDZ domain 428 573 IPR041517 -
Sed08g2488 576 Gene3D - 318 426 IPR036034 GO:0005515(InterPro)
Sed08g2488 576 FunFam Protease Do-like 9 92 199 - -
Sed08g2488 576 Gene3D - 106 199 IPR043504 -
Sed08g2488 576 Pfam PDZ domain 338 418 IPR001478 GO:0005515(InterPro)
Sed08g2488 576 MobiDBLite consensus disorder prediction 1 17 - -
Sed08g2488 576 CDD PDZ_serine_protease 319 418 - -
Sed08g2488 576 SUPERFAMILY PDZ domain-like 344 426 IPR036034 GO:0005515(InterPro)
Sed08g2488 576 PRINTS HtrA/DegQ protease family signature 144 156 IPR001940 GO:0004252(InterPro)|GO:0006508(InterPro)
Sed08g2488 576 PRINTS HtrA/DegQ protease family signature 172 192 IPR001940 GO:0004252(InterPro)|GO:0006508(InterPro)
Sed08g2488 576 PRINTS HtrA/DegQ protease family signature 360 372 IPR001940 GO:0004252(InterPro)|GO:0006508(InterPro)
Sed08g2488 576 PRINTS HtrA/DegQ protease family signature 214 238 IPR001940 GO:0004252(InterPro)|GO:0006508(InterPro)
Sed08g2488 576 PRINTS HtrA/DegQ protease family signature 251 268 IPR001940 GO:0004252(InterPro)|GO:0006508(InterPro)
Sed08g2488 576 Gene3D - 201 311 IPR043504 -
Sed08g2488 576 FunFam protease Do-like 9 201 311 - -
Sed08g2488 576 PANTHER - 46 575 - GO:0004252(PANTHER)
Sed08g2488 576 MobiDBLite consensus disorder prediction 1 89 - -
Sed08g2488 576 SUPERFAMILY Trypsin-like serine proteases 112 313 IPR009003 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2488 K25897 - - csv:101219688 1083.94
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1680 Sed-Chr1:12164365 Sed08g2488 Sed-Chr8:37755829 9.20E-292 dispersed
Sed03g2754 Sed-Chr3:43966951 Sed08g2488 Sed-Chr8:37755829 1.80E-122 transposed
Sed09g1195 Sed-Chr9:36135796 Sed08g2488 Sed-Chr8:37755829 2.40E-144 transposed
Sed01g1679 Sed-Chr1:12159844 Sed08g2488 Sed-Chr8:37755829 2.40E-221 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g706 Blo04g00740 . . . . . . . Cmo13g00928 Cmo18g00119 . . . . . Cpe20g00227 . . . . . . . . . . . . . . . Cone2ag0889 Cone16ag0121 . . Lsi02g00353 Csa01g00829 Chy12g01288 Cme12g01714 . . . Bda14g00819 . Bpe15g00630 . . Sed08g2488 . . Cma13g00902 Cma18g00151 Car13g00742 Car18g00145 Cpe09g01042 . Bhi08g01579 Tan05g2035 Cmetu12g0872 Lac10g0425 Hepe07g2245 . . Cla01g01391 Cam01g1452 Cec01g1487 . Clacu01g1476 Cmu01g1371 Cre01g1286 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004589 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 2 1 1 2 1 2 42