Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed08g2502 | ATGAGGAATTTGAACTGGTTGAAGCCGAGTTCGATCCATGGGAAGACTGGGAGGAGGCTTTCACTCGGGGAGTACGAGCGGGCCGTGTCGTGGTCCAAGTACTTGGTGTCGTCGGGTGCCGAGATTAAGGGGGAAGGTGAGGAAGAATGGAGTGCAGATCTGTCCCAGTTGTTTATTGGCTTTAAATTTGCGAATGGAAGGCATAGCAGGATTTATAGAGGTTTGTATAAGCAGAGTGATGTTGCTATTAAGCTGATAAGCCAGCCTGAGAAGGATGAGAACTTGGCTACTTTTCTTGAGAATCAGTTCATTTCAGAGGTCGCATTGCTCTTTCGATTGAGACATCCCAATATCATCACTTTCATTGCAGCTTGCAAGAAGCCTCCAGTTTTTTGTATTATCACGGAGTATATGGCAGGAGGCTCGTTAAGAAAATATCTCCATCAGCAGGAGCCACATTCGGTTCCGCTCGACTTGGTACTGAAACTAGCCCTCGACATCGCTCGCGGGATGCAGTACCTTCATTCTCAAGGAATACTTCATAGAGATCTCAAATCAGAAAATCTTTTACTTGGTGAAGATATGTGCGTTAAGGTAGCAGATTTCGGCATCTCGTGCGTAGAATCCCAGTGCGGAAGTGCAAAGGGGTTCACTGGAACATATCGCTGGATGGCACCTGAAATGATCAAAGAAAAACATCACACAAAAAAGGTTGATGTTTATAGTTTTGGCATTGTCTTGTGGGAGCTCTTAACTGCATTGATACCATTTGATGACATGACTCCTGAACAAGCAGCATTTGCAGTCTGCCAGAAGAATGCAAGACCCCCTCTCCCTACAGCATGTCCGCAGGCATTTCGTCACCTGATCAAGAGATGCTGGTCTAAAAAACCCGAAAAGCGTCCGCATTTTGACGAGATTGTTTCGATTTTGGAAACTTATATGGAGTCTTATAATGAAGATCCAGAATTTTTCTGTCACTACGTGCCTTCATCTGGATATAGTGCATTACAATGCTTACCAAAATGTATCTCTGCTTCCTTGATGCCTAAGAATTCATCATCTTGA | 1068 | 44.38 | MRNLNWLKPSSIHGKTGRRLSLGEYERAVSWSKYLVSSGAEIKGEGEEEWSADLSQLFIGFKFANGRHSRIYRGLYKQSDVAIKLISQPEKDENLATFLENQFISEVALLFRLRHPNIITFIAACKKPPVFCIITEYMAGGSLRKYLHQQEPHSVPLDLVLKLALDIARGMQYLHSQGILHRDLKSENLLLGEDMCVKVADFGISCVESQCGSAKGFTGTYRWMAPEMIKEKHHTKKVDVYSFGIVLWELLTALIPFDDMTPEQAAFAVCQKNARPPLPTACPQAFRHLIKRCWSKKPEKRPHFDEIVSILETYMESYNEDPEFFCHYVPSSGYSALQCLPKCISASLMPKNSSS | 355 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 37827648 | 37830464 | + | Sed0013221.1 | Sed08g2502 | 724278 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed08g2502 | 355 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 179 | 191 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed08g2502 | 355 | Gene3D | Transferase(Phosphotransferase) domain 1 | 140 | 326 | - | - | |
Sed08g2502 | 355 | SUPERFAMILY | Protein kinase-like (PK-like) | 47 | 311 | IPR011009 | - | |
Sed08g2502 | 355 | CDD | STKc_MAP3K-like | 66 | 311 | - | - | |
Sed08g2502 | 355 | FunFam | Serine/threonine-protein kinase isoform 1 | 47 | 139 | - | - | |
Sed08g2502 | 355 | SMART | serkin_6 | 57 | 315 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed08g2502 | 355 | ProSiteProfiles | Protein kinase domain profile. | 57 | 315 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed08g2502 | 355 | PRINTS | Tyrosine kinase catalytic domain signature | 135 | 148 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed08g2502 | 355 | PRINTS | Tyrosine kinase catalytic domain signature | 173 | 191 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed08g2502 | 355 | PRINTS | Tyrosine kinase catalytic domain signature | 219 | 229 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed08g2502 | 355 | PRINTS | Tyrosine kinase catalytic domain signature | 238 | 260 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed08g2502 | 355 | PRINTS | Tyrosine kinase catalytic domain signature | 282 | 304 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed08g2502 | 355 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 52 | 315 | IPR050167 | GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER) | |
Sed08g2502 | 355 | Pfam | Protein tyrosine and serine/threonine kinase | 63 | 311 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed08g2502 | 355 | Gene3D | Phosphorylase Kinase; domain 1 | 47 | 139 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g2760 | Sed-Chr3:44050777 | Sed08g2502 | Sed-Chr8:37827648 | 1.30E-77 | dispersed | |
Sed04g3824 | Sed-Chr4:46695465 | Sed08g2502 | Sed-Chr8:37827648 | 8.80E-69 | dispersed | |
Sed05g2202 | Sed-Chr5:34825792 | Sed08g2502 | Sed-Chr8:37827648 | 4.10E-66 | dispersed | |
Sed08g2263 | Sed-Chr8:36241638 | Sed08g2502 | Sed-Chr8:37827648 | 1.20E-87 | dispersed | |
Sed08g2502 | Sed-Chr8:37827648 | Sed08g2504 | Sed-Chr8:37827648 | 3.30E-159 | dispersed | |
Sed08g2502 | Sed-Chr8:37827648 | Sed08g2503 | Sed-Chr8:37827648 | 1.70E-211 | tandem | |
Sed01g3827 | Sed-Chr1:67450970 | Sed08g2502 | Sed-Chr8:37827648 | 2.30E-23 | transposed | |
Sed02g1706 | Sed-Chr2:52102820 | Sed08g2502 | Sed-Chr8:37827648 | 7.60E-27 | transposed | |
Sed01g1660 | Sed-Chr1:12067710 | Sed08g2502 | Sed-Chr8:37827648 | 3.30E-191 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79708 | PF07714 | PK_Tyr_Ser-Thr | 1.30E-66 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed08g2502 | - | - | - | 0.0 |