Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2503 ATGAGGAATTTGAACTGGTTGAAGCCGAGTTCGATCCATGGGAAGACTGGGAGGAGGCTTTCACTCGGGGAGTACGAGCGGGCCGTGTCGTGGTCCAAGTACTTGGTGTCGTCGGGTGCCGAGATTAAGGGGGAAGGTGAGGAAGAATGGAGTGCAGATCTGTCCCAGTTGTTTATTGGCTTTAAATTTGCGAATGGAAGGCATAGCAGGATTTATAGAGGTTTGTATAAGCAGAGTGATGTTGCTATTAAGCTGATAAGCCAGCCTGAGAAGGATGAGAACTTGGCTACTTTTCTTGAGAATCAGTTCATTTCAGAGGTCGCATTGCTCTTTCGATTGAGACATCCCAATATCATCACTTTCATTGCAGCTTGCAAGAAGCCTCCAGTTTTTTGTATTATCACGGAGTATATGGCAGGAGGCTCGTTAAGAAAATATCTCCATCAGCAGGAGCCACATTCGGTTCCGCTCGACTTGGTACTGAAACTAGCCCTCGACATCGCTCGCGGGATGCAGTACCTTCATTCTCAAGGAATACTTCATAGAGATCTCAAATCAGAAAATCTTTTACTTGGTGAAGATATGTGCGTTAAGGTAGCAGATTTCGGCATCTCGTGCGTAGAATCCCAGTGCGGAAGTGCAAAGGGGTTCACTGGAACATATCGCTGGATGGCACCTGAAATGATCAAAGAAAAACATCACACAAAAAAGGTTGATGTTTATAGTTTTGGCATTGTCTTGTGGGAGCTCTTAACTGCATTGATACCATTTGATGACATGACTCCTGAACAAGCAGCATTTGCAGTCTGCCAGAAGAATGCAAGACCCCCTCTCCCTACAGCATGTCCGCAGGCATTTCGTCACCTGATCAAGAGATGCTGGTCTAAAAAACCCGAAAAGCGTCCGCATTTTGACGAGATTGTTTCGATTTTGGAAACTTATATGGAGTCTTATAATGAAGATCCAGAATTTTTCTGTCACTACGTGCCTTCATCTGGATATAGTGCATTACAATGCTTACCAAAATGTATCTCTGCTTCCTTGATGCCTAAGAATTCATCATCTTGA 1068 44.38 MRNLNWLKPSSIHGKTGRRLSLGEYERAVSWSKYLVSSGAEIKGEGEEEWSADLSQLFIGFKFANGRHSRIYRGLYKQSDVAIKLISQPEKDENLATFLENQFISEVALLFRLRHPNIITFIAACKKPPVFCIITEYMAGGSLRKYLHQQEPHSVPLDLVLKLALDIARGMQYLHSQGILHRDLKSENLLLGEDMCVKVADFGISCVESQCGSAKGFTGTYRWMAPEMIKEKHHTKKVDVYSFGIVLWELLTALIPFDDMTPEQAAFAVCQKNARPPLPTACPQAFRHLIKRCWSKKPEKRPHFDEIVSILETYMESYNEDPEFFCHYVPSSGYSALQCLPKCISASLMPKNSSS 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 37827648 37830464 + Sed0013221.2 Sed08g2503 724279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2503 355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g2503 355 Gene3D Transferase(Phosphotransferase) domain 1 140 326 - -
Sed08g2503 355 SUPERFAMILY Protein kinase-like (PK-like) 47 311 IPR011009 -
Sed08g2503 355 CDD STKc_MAP3K-like 66 311 - -
Sed08g2503 355 FunFam Serine/threonine-protein kinase isoform 1 47 139 - -
Sed08g2503 355 SMART serkin_6 57 315 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g2503 355 ProSiteProfiles Protein kinase domain profile. 57 315 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g2503 355 PRINTS Tyrosine kinase catalytic domain signature 135 148 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g2503 355 PRINTS Tyrosine kinase catalytic domain signature 173 191 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g2503 355 PRINTS Tyrosine kinase catalytic domain signature 219 229 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g2503 355 PRINTS Tyrosine kinase catalytic domain signature 238 260 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g2503 355 PRINTS Tyrosine kinase catalytic domain signature 282 304 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g2503 355 PANTHER SERINE-THREONINE PROTEIN KINASE 52 315 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Sed08g2503 355 Pfam Protein tyrosine and serine/threonine kinase 63 311 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g2503 355 Gene3D Phosphorylase Kinase; domain 1 47 139 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1660 Sed-Chr1:12067710 Sed08g2503 Sed-Chr8:37827648 3.30E-191 dispersed
Sed02g1706 Sed-Chr2:52102820 Sed08g2503 Sed-Chr8:37827648 7.60E-27 dispersed
Sed08g2503 Sed-Chr8:37827648 Sed14g1314 Sed-Chr14:22010268 6.30E-110 dispersed
Sed08g2502 Sed-Chr8:37827648 Sed08g2503 Sed-Chr8:37827648 1.70E-211 tandem
Sed08g2503 Sed-Chr8:37827648 Sed08g2504 Sed-Chr8:37827648 3.30E-159 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79709 PF07714 PK_Tyr_Ser-Thr 1.30E-66 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2503 - - - 0.0