Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed08g2504 | ATGAGGAATTTGAACTGGTTGAAGCCGAGTTCGATCCATGGGAAGACTGGGAGGAGGCTTTCACTCGGGGAGTACGAGCGGGCCGTGTCGTGGTCCAAGTACTTGGTGTCGTCGGGTGCCGAGATTAAGGGGGAAGGTGAGGAAGAATGGAGTGCAGATCTGTCCCAGTTGTTTATTGGCTTTAAATTTGCGAATGGAAGGCATAGCAGGATTTATAGAGGTTTGTATAAGCAGAGTGATGTTGCTATTAAGCTGATAAGCCAGCCTGAGAAGGATGAGAACTTGGCTACTTTTCTTGAGAATCAGTTCATTTCAGAGGTCGCATTGCTCTTTCGATTGAGACATCCCAATATCATCACTTTCATTGCAGCTTGCAAGAAGCCTCCAGTTTTTTGTATTATCACGGAGTATATGGCAGGAGGCTCGTTAAGAAAATATCTCCATCAGCAGGAGCCACATTCGGTTCCGCTCGACTTGGTACTGAAACTAGCCCTCGACATCGCTCGCGGGATGCAGTACCTTCATTCTCAAGGAATACTTCATAGAGATCTCAAATCAGAAAATCTTTTACTTGGTGAAGATATGTGCGTTAAGGTAGCAGATTTCGGCATCTCGTGCGTAGAATCCCAGTGCGGAAGTGCAAAGGGGTTCACTGGAACATATCGCTGGATGGCACCTGAAATGATCAAAGAAAAACATCACACAAAAAAGGTTGATGTTTATAGTTTTGGCATTGTCTTGTGGGAGCTCTTAACTGCATTGATACCATTTGATGACATGACTCCTGAACAAGCAGCATTTGCAGTCTGCCAGAAGGTAACGATACCGTTCTTCACGTCCTTAATTTAG | 849 | 45.11 | MRNLNWLKPSSIHGKTGRRLSLGEYERAVSWSKYLVSSGAEIKGEGEEEWSADLSQLFIGFKFANGRHSRIYRGLYKQSDVAIKLISQPEKDENLATFLENQFISEVALLFRLRHPNIITFIAACKKPPVFCIITEYMAGGSLRKYLHQQEPHSVPLDLVLKLALDIARGMQYLHSQGILHRDLKSENLLLGEDMCVKVADFGISCVESQCGSAKGFTGTYRWMAPEMIKEKHHTKKVDVYSFGIVLWELLTALIPFDDMTPEQAAFAVCQKVTIPFFTSLI | 282 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 37827648 | 37830464 | + | Sed0013221.3 | Sed08g2504 | 724280 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed08g2504 | 282 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 179 | 191 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed08g2504 | 282 | FunFam | Serine/threonine-protein kinase isoform 1 | 47 | 139 | - | - | |
Sed08g2504 | 282 | PRINTS | Tyrosine kinase catalytic domain signature | 173 | 191 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed08g2504 | 282 | PRINTS | Tyrosine kinase catalytic domain signature | 219 | 229 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed08g2504 | 282 | PRINTS | Tyrosine kinase catalytic domain signature | 238 | 260 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed08g2504 | 282 | PRINTS | Tyrosine kinase catalytic domain signature | 135 | 148 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed08g2504 | 282 | SMART | serkin_6 | 57 | 278 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed08g2504 | 282 | ProSiteProfiles | Protein kinase domain profile. | 57 | 282 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed08g2504 | 282 | CDD | STKc_MAP3K-like | 66 | 272 | - | - | |
Sed08g2504 | 282 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 52 | 270 | IPR050167 | GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER) | |
Sed08g2504 | 282 | Pfam | Protein tyrosine and serine/threonine kinase | 63 | 271 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed08g2504 | 282 | Gene3D | Transferase(Phosphotransferase) domain 1 | 140 | 280 | - | - | |
Sed08g2504 | 282 | SUPERFAMILY | Protein kinase-like (PK-like) | 48 | 277 | IPR011009 | - | |
Sed08g2504 | 282 | Gene3D | Phosphorylase Kinase; domain 1 | 47 | 139 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed08g2502 | Sed-Chr8:37827648 | Sed08g2504 | Sed-Chr8:37827648 | 3.30E-159 | dispersed | |
Sed08g2504 | Sed-Chr8:37827648 | Sed14g1315 | Sed-Chr14:22010268 | 8.60E-94 | dispersed | |
Sed08g2503 | Sed-Chr8:37827648 | Sed08g2504 | Sed-Chr8:37827648 | 3.30E-159 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79710 | PF07714 | PK_Tyr_Ser-Thr | 7.60E-54 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed08g2504 | - | - | - | 0.0 |