Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2504 ATGAGGAATTTGAACTGGTTGAAGCCGAGTTCGATCCATGGGAAGACTGGGAGGAGGCTTTCACTCGGGGAGTACGAGCGGGCCGTGTCGTGGTCCAAGTACTTGGTGTCGTCGGGTGCCGAGATTAAGGGGGAAGGTGAGGAAGAATGGAGTGCAGATCTGTCCCAGTTGTTTATTGGCTTTAAATTTGCGAATGGAAGGCATAGCAGGATTTATAGAGGTTTGTATAAGCAGAGTGATGTTGCTATTAAGCTGATAAGCCAGCCTGAGAAGGATGAGAACTTGGCTACTTTTCTTGAGAATCAGTTCATTTCAGAGGTCGCATTGCTCTTTCGATTGAGACATCCCAATATCATCACTTTCATTGCAGCTTGCAAGAAGCCTCCAGTTTTTTGTATTATCACGGAGTATATGGCAGGAGGCTCGTTAAGAAAATATCTCCATCAGCAGGAGCCACATTCGGTTCCGCTCGACTTGGTACTGAAACTAGCCCTCGACATCGCTCGCGGGATGCAGTACCTTCATTCTCAAGGAATACTTCATAGAGATCTCAAATCAGAAAATCTTTTACTTGGTGAAGATATGTGCGTTAAGGTAGCAGATTTCGGCATCTCGTGCGTAGAATCCCAGTGCGGAAGTGCAAAGGGGTTCACTGGAACATATCGCTGGATGGCACCTGAAATGATCAAAGAAAAACATCACACAAAAAAGGTTGATGTTTATAGTTTTGGCATTGTCTTGTGGGAGCTCTTAACTGCATTGATACCATTTGATGACATGACTCCTGAACAAGCAGCATTTGCAGTCTGCCAGAAGGTAACGATACCGTTCTTCACGTCCTTAATTTAG 849 45.11 MRNLNWLKPSSIHGKTGRRLSLGEYERAVSWSKYLVSSGAEIKGEGEEEWSADLSQLFIGFKFANGRHSRIYRGLYKQSDVAIKLISQPEKDENLATFLENQFISEVALLFRLRHPNIITFIAACKKPPVFCIITEYMAGGSLRKYLHQQEPHSVPLDLVLKLALDIARGMQYLHSQGILHRDLKSENLLLGEDMCVKVADFGISCVESQCGSAKGFTGTYRWMAPEMIKEKHHTKKVDVYSFGIVLWELLTALIPFDDMTPEQAAFAVCQKVTIPFFTSLI 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 37827648 37830464 + Sed0013221.3 Sed08g2504 724280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2504 282 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g2504 282 FunFam Serine/threonine-protein kinase isoform 1 47 139 - -
Sed08g2504 282 PRINTS Tyrosine kinase catalytic domain signature 173 191 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g2504 282 PRINTS Tyrosine kinase catalytic domain signature 219 229 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g2504 282 PRINTS Tyrosine kinase catalytic domain signature 238 260 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g2504 282 PRINTS Tyrosine kinase catalytic domain signature 135 148 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g2504 282 SMART serkin_6 57 278 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g2504 282 ProSiteProfiles Protein kinase domain profile. 57 282 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g2504 282 CDD STKc_MAP3K-like 66 272 - -
Sed08g2504 282 PANTHER SERINE-THREONINE PROTEIN KINASE 52 270 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Sed08g2504 282 Pfam Protein tyrosine and serine/threonine kinase 63 271 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g2504 282 Gene3D Transferase(Phosphotransferase) domain 1 140 280 - -
Sed08g2504 282 SUPERFAMILY Protein kinase-like (PK-like) 48 277 IPR011009 -
Sed08g2504 282 Gene3D Phosphorylase Kinase; domain 1 47 139 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2502 Sed-Chr8:37827648 Sed08g2504 Sed-Chr8:37827648 3.30E-159 dispersed
Sed08g2504 Sed-Chr8:37827648 Sed14g1315 Sed-Chr14:22010268 8.60E-94 dispersed
Sed08g2503 Sed-Chr8:37827648 Sed08g2504 Sed-Chr8:37827648 3.30E-159 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79710 PF07714 PK_Tyr_Ser-Thr 7.60E-54 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2504 - - - 0.0