Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2514 ATGTTTGCATTAGTGCTATCCTTTGGGCTTCTACTGACTGCCCTTAAAAGCCGCAAGGCTAGATCATGGCGCTATGGGACTGGTTGGGTACGAGGCTTTATCGCAGATTATGGAGTTCCACTTATGGTGCTCGTATGGACAGCCTTATCTTACATTCCAGTTAACAATGTCCCACTTGGGATACCAAGAAGGCTTTTCAGTCCTAATCCTTGGTCTCCGGGTGCCTACTCAAATTGGACGGTTGTAAAGGAAATGTTGAGAGTGCCTCCCTTGTATATAGTTGGAGCATTAATACCAGCAACTATGATAGCAGTTCTTTACTACTTTGATCACAGTGTTGCATCTCAACTTGCCCAACAGAAAGAGTTTAATTTGAAAAAACCAGCTTCATATCATTATGATCTTCTTCTCCTAGGTTTCCTTGTTATACTATGTGGACTTATAGGCATACCACCTTCCAATGGTGTAATTCCTCAGTCTCCGATGCACACGAAAAGCTTAGCTACCCTAAAACATCAGCTTTTGCGGAACAAGCTGGTAGCAGCAGCACGTCAAAGTTTTCGTAAAAATTCAAACTTGAGTCAATTATACCGAAACATGCAAGAGGCATATAATGAGATGCAGACTCCCTTAATTTACCAAAATCCACCAGCTGCGGGGTTGAAGGAGTTGAAAGATACGACGATTCAACTAGCTTCAAGAACTGGCTACATTGATGCACCAGTTGATGAAACGGTTTTCGACGTGGATAAAGATATTGATGATCTTCTGCCTGTGGAAGTTAAAGAACAACGTCTCAGCAATTTGCTTCAGTCAATAATGGTTGGTGGTTGTGTTGCTGCTATGCCTCTTTTAAAGAAGATCCCGACTTCGGTTCTTTGGGGTTACTTTGCGTTCATGGCAATCGAGAGCTTGCCCGGAAATCAATTCTGGGAAAGGATTTTGCTGCTTCTCACTGCTCCGAGCCGAAGATACAAGGTGCTGGAGGAATATCATGCAACCTTCCTAGAAACTGTCCCCTTCAAAACAATTGCAACCTTCACCTTGTTTCAGACAGTATATCTACTGATGTGTTTTGGTTTAACCTGGATTCCAATTGCTGGTGTTCTTTTTCCGCTGTTGATCATGCTTCTCGTGCCCGTGCGACAGTATTTGCTCCCCAGGTTCTTCAAAGGAGCTCATCTTCAGGACTTGGATGCTGCTGAATACGAGGAAACCCCTGCAATCGCTTGTAATCCGTCGTTGGAAGATCGAATGGGAAGAACTCCCAACATCGATGACAGTGAAATACTCGAGGAGATGATCACAAGAAGCCGTGGTGAGATTCGGCGTACGCAGAGTTCGAAAGTGACAAGCTCAACCCCAACTTCTCTAGAGAGCATCAAACCTCCCTACAGCCCACAAATACCAAAGAAAGTGTACAGTCCAAGGATTAATGAGCTCAGAAGAGAAAGGAGTTTTGGAAAAGGACTTGAATTTAAGCCAAGTTCTAGTGCAGAAGCAGGAACAGCAGGACCATCTTTTAGAAATTAG 1533 43.84 MFALVLSFGLLLTALKSRKARSWRYGTGWVRGFIADYGVPLMVLVWTALSYIPVNNVPLGIPRRLFSPNPWSPGAYSNWTVVKEMLRVPPLYIVGALIPATMIAVLYYFDHSVASQLAQQKEFNLKKPASYHYDLLLLGFLVILCGLIGIPPSNGVIPQSPMHTKSLATLKHQLLRNKLVAAARQSFRKNSNLSQLYRNMQEAYNEMQTPLIYQNPPAAGLKELKDTTIQLASRTGYIDAPVDETVFDVDKDIDDLLPVEVKEQRLSNLLQSIMVGGCVAAMPLLKKIPTSVLWGYFAFMAIESLPGNQFWERILLLLTAPSRRYKVLEEYHATFLETVPFKTIATFTLFQTVYLLMCFGLTWIPIAGVLFPLLIMLLVPVRQYLLPRFFKGAHLQDLDAAEYEETPAIACNPSLEDRMGRTPNIDDSEILEEMITRSRGEIRRTQSSKVTSSTPTSLESIKPPYSPQIPKKVYSPRINELRRERSFGKGLEFKPSSSAEAGTAGPSFRN 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 37901717 37907945 + Sed0021778.1 Sed08g2514 724290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2514 510 MobiDBLite consensus disorder prediction 476 490 - -
Sed08g2514 510 MobiDBLite consensus disorder prediction 445 463 - -
Sed08g2514 510 Pfam HCO3- transporter integral membrane domain 259 401 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Sed08g2514 510 Pfam HCO3- transporter integral membrane domain 2 171 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Sed08g2514 510 MobiDBLite consensus disorder prediction 437 510 - -
Sed08g2514 510 PANTHER ANION EXCHANGE PROTEIN 1 437 IPR003020 GO:0005452(InterPro)|GO:0005886(PANTHER)|GO:0006820(InterPro)|GO:0016020(InterPro)|GO:0022857(PANTHER)|GO:0050801(PANTHER)|GO:0055085(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g2136 Sed-Chr6:45177084 Sed08g2514 Sed-Chr8:37901717 1.20E-135 dispersed
Sed01g1656 Sed-Chr1:12020368 Sed08g2514 Sed-Chr8:37901717 2.50E-267 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2514 K24194 - csv:101203606 926.006