Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2515 ATGCAGAGCTCTGCCGTTACTTTCTCGCCGTCGCTTCCTCTTCTCAAGCCTCGGCGGCCGTCAACATCGTCTTTCAGCTCTGGATGCAACTCAATTCGGTTATCTTCTTCGTCTTCCTCAAATTCCAGAGATCTCGGACACCTAAACGGTGTTGGACTCCCTTCCTCTTGGCCTCGTCGATCTTGGACTCTTTCTTCGTCCGCCAAGCTCCGGCCTTGGACTGGTGTGCCCTTGCTTGCTTCGGACTCCGATTCGAGTCGTTTCAAGGTTCAGGCCACTGCGGTGCCGGATAGCTCGGCAGAGGACGCGAGTTCTGGCGGTAATCTGTCGAAAACGCTTGAGCTCGGGTTGTTGTTTGGTCTCTGGTACCTTTTCAACATCTACTTTAACATCTACAACAAGCAGGTCCTCAAGGTGTTTCCATACCCTGTAACTGTCACTGCGGTTCAATTTTCCGTAGGCACCGTACTTGTTCTTCTTATGTGGGGACTTAATCTCTACAAAAAGCCAAAGATTAGTGGTGCTCAGCTTGCCGCTATCCTTCCGCTGGCATTCGTTCACACATTGGGCAATCTTTTTACAAATATGAGTCTTGGGAAAGTGGCAGTATCATTCACTCACACAATCAAAGCTATGGAGCCATTCTTTTCAGTTATCCTGTCAGCAATGTTTCTTGGAGAGACTCCTACTCCCTGGGTACTTGCATCTCTTTTGCCAATTGTTGGCGGTGTTGTATTGGCATCTGCTACTGAGGCCTCCTTCAACTGGGCTGGATTTACGAGTGCAATGGCATCCAATTTGACTAATCAATCTCGCAATGTCCTTAGCAAAAAGGTTATGGTGAAAAAAGATGACTCCATTGATAACATCACCCTCTTTTCAATTATAACAGTCATGTCCTTTTTCTTATTGTCCCCTGTGGCTATTTTCATGGAAGGTGTCAAGTTTACTCCAGCCTACCTTCAATCAGCTGGATTGAACATGAAACAAGTATACGTTAGGTCTCTTCTTGCTGCCCTTTGTTTCCATGCATACCAACAGGTTTCTTACATGATATTGCAAAGAGTATCACCTGTTACTCACTCGGTCGGCAATTGCGTAAAGCGTGTTGTGGTCATTGTGAGCTCTGTTATCTTCTTCCAAACACCTGTTTCTCCAATCAACTCTATTGGCACAGGAATAGCTCTTGCTGGGGTTTTCTTGTATTCAAGGGTTAAGCGCATCAAAGCTAAGCCAAAGACAGCTTAA 1248 46.23 MQSSAVTFSPSLPLLKPRRPSTSSFSSGCNSIRLSSSSSSNSRDLGHLNGVGLPSSWPRRSWTLSSSAKLRPWTGVPLLASDSDSSRFKVQATAVPDSSAEDASSGGNLSKTLELGLLFGLWYLFNIYFNIYNKQVLKVFPYPVTVTAVQFSVGTVLVLLMWGLNLYKKPKISGAQLAAILPLAFVHTLGNLFTNMSLGKVAVSFTHTIKAMEPFFSVILSAMFLGETPTPWVLASLLPIVGGVVLASATEASFNWAGFTSAMASNLTNQSRNVLSKKVMVKKDDSIDNITLFSIITVMSFFLLSPVAIFMEGVKFTPAYLQSAGLNMKQVYVRSLLAALCFHAYQQVSYMILQRVSPVTHSVGNCVKRVVVIVSSVIFFQTPVSPINSIGTGIALAGVFLYSRVKRIKAKPKTA 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 37910257 37913967 - Sed0007708.1 Sed08g2515 724291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2515 415 Pfam Triose-phosphate Transporter family 114 403 IPR004853 -
Sed08g2515 415 SUPERFAMILY Multidrug resistance efflux transporter EmrE 327 406 - -
Sed08g2515 415 PANTHER SOLUTE CARRIER FAMILY 35 105 404 IPR050186 GO:0005794(PANTHER)|GO:0015297(PANTHER)
Sed08g2515 415 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 113 413 IPR004696 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Sed08g2515 415 SUPERFAMILY Multidrug resistance efflux transporter EmrE 158 248 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2515 Sed-Chr8:37910257 Sed11g1912 Sed-Chr11:33588037 5.10E-111 dispersed
Sed01g1658 Sed-Chr1:12028864 Sed08g2515 Sed-Chr8:37910257 3.30E-198 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2515 K15283 - csv:101203848 689.108