Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2521 ATGGCGATCTCCCTTCGCCTATCCCCGATTTCGTTGTCGTCTTCTTTCAATTCCCACTCCGAAACAAACCCTCTGTGTTCTTCTACATTCGATTGTGTAAATCCTCGTGAAAAGCGAAGCTATGACGAGGTTCGTGGTCTGAAATTGAATCTCAACCCTTCAAGAACGGTGGTTTCCGGTGCCGTGTCGCCGGCAGCGGTTGAGAATTCGGCGGCGCCTATTGCTGCATTCAGTAATTTGATTGAATCTCTGATTAATGGCGTGCATTTGTCGGAATATGAAGCGGAGGCGTCTCTTCAGTATCTTCTTTATAATGATTCTAGCGACGCATTGATTAGTGCTTTTCTTGTGTTATTAAGAGCCAAAGGAGAGACTTTTGAAGAAATTGTGGGACTTGCGAGGGCAATGATCAAGCGTAGTGTGAAGGTGGATGGCTTGTTTGATGCCGTGGACATTGTTGGAACAGGTGGTGATGGAGCAAACACAGTAAACATTTCAACTGGTGCTTCAATACTTGCTGCAGCTTGCGGCACAAAGGTCGCGAAGCAAGGAAATCGTTCGAGTTCTTCTGCTTGTGGAAGTGCTGATGTCTTAGAGGAATTAGGGGTAGTTATTGATTTGGGACCTGAGGGAGTTGCCAAGTGTGTTGGTGAAGCTGGAATTGGCTTCATGATGGCTCCCAAATACCATCCTGCAATGAAGATATTCAGACCTGTCAGGAAGAAGCTAAAAGTAAAAACTGCATTTAACATACTGGGCCCTATGCTTAATCCGGCTAGAGTTCCGTTTGCTGTTGTTGGCGTATATTCTGAAAACTTGGTCTCCAAAATGGCCAAAGCACTGCAGCTATTTGGCATGAAAAGAGCATTAGTAGTTCACTCTGAGGGTTTAGACGAGATGAGTCCTCTTGGACCTGGACTAATCCTAGATGTAACACCTGAAAAGATCGAAAAGTTTGCATTTGATCCATTGGATTTTGGCATCCCTCGCTGTACCATTGACGACCTTCGAGGTGAAGGCCCCAGGCATAATGCAGAGGTTCTGAAGCGCGTGCTTTCCGGAGAAAAGGGGCATATTGCAGATGCGCTTATCCTGAATGCTGCTGCCTCCCTTCTGGTTAGCTGCAAAGTGACCACACTGGCCGAGGGAGTCGAGTTGGCTCGAGAAACTCAGCAGTCCGGAAAAGCCATGAAGACCCTTGATTTGTGGATAGAACTCTCCAATAAACTTAAAGAAGTATAA 1242 46.22 MAISLRLSPISLSSSFNSHSETNPLCSSTFDCVNPREKRSYDEVRGLKLNLNPSRTVVSGAVSPAAVENSAAPIAAFSNLIESLINGVHLSEYEAEASLQYLLYNDSSDALISAFLVLLRAKGETFEEIVGLARAMIKRSVKVDGLFDAVDIVGTGGDGANTVNISTGASILAAACGTKVAKQGNRSSSSACGSADVLEELGVVIDLGPEGVAKCVGEAGIGFMMAPKYHPAMKIFRPVRKKLKVKTAFNILGPMLNPARVPFAVVGVYSENLVSKMAKALQLFGMKRALVVHSEGLDEMSPLGPGLILDVTPEKIEKFAFDPLDFGIPRCTIDDLRGEGPRHNAEVLKRVLSGEKGHIADALILNAAASLLVSCKVTTLAEGVELARETQQSGKAMKTLDLWIELSNKLKEV 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 37939014 37943895 + Sed0012780.1 Sed08g2521 724297

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2521 413 Gene3D Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 146 413 IPR035902 -
Sed08g2521 413 FunFam Anthranilate phosphoribosyltransferase 145 409 - -
Sed08g2521 413 Gene3D Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 66 144 - -
Sed08g2521 413 NCBIfam anthranilate phosphoribosyltransferase 81 405 IPR005940 GO:0000162(InterPro)|GO:0004048(InterPro)
Sed08g2521 413 SUPERFAMILY Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 78 143 IPR036320 -
Sed08g2521 413 Pfam Glycosyl transferase family, helical bundle domain 79 139 IPR017459 -
Sed08g2521 413 SUPERFAMILY Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 148 405 IPR035902 -
Sed08g2521 413 PANTHER ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE 70 408 IPR005940 GO:0000162(InterPro)|GO:0000162(PANTHER)|GO:0004048(InterPro)|GO:0005829(PANTHER)
Sed08g2521 413 Hamap Anthranilate phosphoribosyltransferase [trpD]. 79 406 IPR005940 GO:0000162(InterPro)|GO:0004048(InterPro)
Sed08g2521 413 FunFam Anthranilate phosphoribosyltransferase, chloroplastic 63 144 - -
Sed08g2521 413 Pfam Glycosyl transferase family, a/b domain 148 397 IPR000312 GO:0016757(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2521 K00766 - - csv:101204330 624.78
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1641 Sed-Chr1:11921372 Sed08g2521 Sed-Chr8:37939014 9.80E-176 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g770 . . . . . . . . . . . . . . . Cpe20g00249 . . . . . . . . . . . . . . . Cone2ag0915 Cone16ag0093 . . Lsi02g00381 Csa01g00861 Chy12g01260 Cme12g01685 . . . . . . . . Sed08g2521 . . . . Car13g00720 . . . Bhi08g01624 Tan05g1995 Cmetu12g2030 Lac10g0459 Hepe07g2218 . . Cla01g01308 Cam01g1422 Cec01g1456 Cco01g1468 Clacu01g1373 Cmu01g1281 Cre01g1258 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009653 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 2 33